Variant report

Variant	rs575404100
Chromosome Location	chr10:90146686-90146687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89619905..89627532-chr10:90145841..90152433,14	MCF-7	breast:
2	chr10:90105325..90109071-chr10:90144209..90148400,3	MCF-7	breast:
3	chr10:89618790..89627859-chr10:90143252..90153362,36	MCF-7	breast:
4	chr10:90145294..90146833-chr10:90461618..90463490,2	MCF-7	breast:
5	chr10:89968668..89970425-chr10:90144988..90146828,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90144600-90146800	Enhancers	NHEK	skin
2	chr10:90144600-90148200	Flanking Active TSS	Dnd41	blood
3	chr10:90144600-90149000	Enhancers	Small Intestine	intestine
4	chr10:90144800-90146800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:90144800-90147000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:90144800-90148200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:90144800-90148600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:90144800-90149600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:90145000-90147600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:90145200-90146800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:90145200-90146800	Flanking Active TSS	Liver	Liver
12	chr10:90145200-90147200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:90145200-90147200	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr10:90145200-90147200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr10:90145200-90147200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:90145200-90147200	Enhancers	NHDF-Ad	bronchial
17	chr10:90145200-90147400	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr10:90145200-90147400	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr10:90145200-90147600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:90145200-90147600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:90145200-90147600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:90145200-90147600	Enhancers	Fetal Muscle Leg	muscle
23	chr10:90145200-90147600	Flanking Active TSS	Fetal Thymus	thymus
24	chr10:90145400-90146800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:90145400-90147000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr10:90145400-90147000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:90145400-90147000	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr10:90145400-90147200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:90145400-90147200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr10:90145400-90147200	Enhancers	HSMM	muscle
31	chr10:90145400-90147400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr10:90145400-90147400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr10:90145400-90147600	Enhancers	NHLF	lung
34	chr10:90145400-90147800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:90145600-90147400	Flanking Active TSS	Fetal Kidney	kidney
36	chr10:90145600-90147800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:90145800-90146800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:90145800-90146800	Weak transcription	Placenta	Placenta
39	chr10:90145800-90147000	Active TSS	Aorta	Aorta
40	chr10:90145800-90147000	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr10:90145800-90147200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:90145800-90147400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:90145800-90147400	Active TSS	Stomach Smooth Muscle	stomach
44	chr10:90145800-90147600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:90145800-90147600	Enhancers	NH-A	brain
46	chr10:90145800-90148000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:90145800-90149200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:90146000-90146800	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr10:90146000-90147000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr10:90146000-90147000	Active TSS	Brain Substantia Nigra	brain

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