Variant report

Variant	rs4933480
Chromosome Location	chr10:90177034-90177035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1067839	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1067840	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10736351	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10788598	0.82[EUR][1000 genomes]
rs10788599	0.82[EUR][1000 genomes]
rs10788600	0.82[EUR][1000 genomes]
rs10887813	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10887817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887818	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887821	0.81[EUR][1000 genomes]
rs1342451	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1617881	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935584	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2433340	0.80[ASN][1000 genomes]
rs2488270	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4934403	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4934404	0.83[EUR][1000 genomes]
rs7909697	0.82[EUR][1000 genomes]
rs7910594	0.82[EUR][1000 genomes]
rs7911996	0.82[EUR][1000 genomes]
rs7918921	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs792205	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792207	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs792208	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs792209	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792211	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs792212	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792213	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs792214	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs792215	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs792230	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs792235	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs792236	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs806694	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs811558	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs813782	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs814242	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90175400-90177800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:90175400-90177800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:90175600-90178600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:90175800-90177200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:90175800-90177200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:90175800-90177200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:90175800-90177200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:90175800-90177200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:90175800-90177400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:90175800-90177400	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:90175800-90177800	Weak transcription	Psoas Muscle	Psoas
12	chr10:90175800-90178600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:90175800-90178600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:90175800-90178800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:90175800-90178800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:90176200-90178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:90176400-90178400	Enhancers	Fetal Kidney	kidney
18	chr10:90176600-90177200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:90176600-90177800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:90176800-90178000	Enhancers	Fetal Stomach	stomach
21	chr10:90177000-90177600	Enhancers	Stomach Mucosa	stomach
22	chr10:90177000-90177800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:90177000-90177800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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