Variant report

Variant	rs7921352
Chromosome Location	chr10:90186123-90186124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1067839	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1067840	1.00[ASW][hapmap];0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10736351	0.96[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10736352	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10736354	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10749589	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10749590	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10749591	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10788598	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788599	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788600	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10788602	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10887817	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10887818	0.85[CEU][hapmap]
rs10887821	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887823	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10887824	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1169043	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1342450	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1342451	0.85[CEU][hapmap]
rs1342456	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1578696	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs1617881	0.85[CEU][hapmap]
rs1750274	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1935579	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1935581	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.97[ASN][1000 genomes]
rs1935582	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs1935584	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2096194	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2185786	0.96[CEU][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2209553	0.93[MEX][hapmap]
rs2312610	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2433340	0.96[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2437875	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs2477954	0.86[AMR][1000 genomes]
rs2477956	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2576169	0.86[AMR][1000 genomes]
rs2576170	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs2576171	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs2576172	0.80[CEU][hapmap];0.93[MEX][hapmap];0.86[AMR][1000 genomes]
rs2576181	0.96[CEU][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2765456	0.93[MEX][hapmap]
rs2872092	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4509673	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4596981	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4606392	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4619060	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4934403	0.85[CEU][hapmap]
rs4934404	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934409	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4934411	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6586132	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs6586134	0.85[CEU][hapmap]
rs6586139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7899828	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7907732	0.88[EUR][1000 genomes]
rs7909697	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910594	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911996	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7918921	0.85[CEU][hapmap]
rs792205	0.85[CEU][hapmap]
rs792207	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs792208	0.96[CEU][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs792209	0.84[CEU][hapmap]
rs792211	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs792213	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs792214	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs792215	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs792230	0.85[CEU][hapmap]
rs792234	0.92[CEU][hapmap]
rs792235	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7922551	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs796945	0.83[ASW][hapmap];0.88[CEU][hapmap]
rs806694	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs813782	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs814242	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90178000-90188000	Weak transcription	Fetal Lung	lung
2	chr10:90186000-90186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:90186000-90186600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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