Variant report

Variant	rs1578696
Chromosome Location	chr10:90192003-90192004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10736351	0.81[JPT][hapmap]
rs10736352	0.85[ASN][1000 genomes]
rs10736354	0.84[ASN][1000 genomes]
rs10749589	0.85[ASN][1000 genomes]
rs10749590	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10749591	0.83[ASN][1000 genomes]
rs10788598	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10788599	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10788600	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10788602	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10887821	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10887823	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10887824	0.85[ASN][1000 genomes]
rs1342450	0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1342456	0.83[ASN][1000 genomes]
rs1750274	0.91[CHB][hapmap]
rs1935579	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1935581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935582	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096194	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs2185786	0.82[CHB][hapmap]
rs2312610	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2437875	0.83[CHB][hapmap]
rs2477956	0.82[CHB][hapmap]
rs2576170	0.83[CHB][hapmap]
rs2576171	0.83[CHB][hapmap]
rs2576172	0.82[CHB][hapmap]
rs2576181	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2872092	0.85[ASN][1000 genomes]
rs4509673	0.85[ASN][1000 genomes]
rs4596981	0.85[ASN][1000 genomes]
rs4606392	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4619060	0.82[ASN][1000 genomes]
rs4934404	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4934409	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4934411	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6586139	0.83[ASN][1000 genomes]
rs7899828	0.85[ASN][1000 genomes]
rs7909697	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7910594	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7911996	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7921352	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs792208	0.82[JPT][hapmap]
rs7922551	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90188600-90192800	Weak transcription	Stomach Mucosa	stomach
2	chr10:90188800-90192800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:90188800-90193000	Weak transcription	HMEC	breast
4	chr10:90188800-90197200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:90189000-90193400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:90189400-90192800	Weak transcription	Hela-S3	cervix
7	chr10:90192000-90193000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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