Variant report

Variant	rs2437875
Chromosome Location	chr10:90248945-90248946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90243048..90244941-chr10:90246106..90249006,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10509552	0.82[JPT][hapmap]
rs1067839	0.82[CEU][hapmap];0.90[AMR][1000 genomes]
rs1067840	0.81[CEU][hapmap];0.90[AMR][1000 genomes]
rs10736351	0.82[CEU][hapmap];0.93[AMR][1000 genomes]
rs10736352	0.93[AMR][1000 genomes]
rs10736354	0.85[AMR][1000 genomes]
rs10749589	0.93[AMR][1000 genomes]
rs10749590	0.82[CEU][hapmap];0.96[AMR][1000 genomes]
rs10749591	0.96[AMR][1000 genomes]
rs10788598	0.81[CEU][hapmap];0.90[AMR][1000 genomes]
rs10788599	0.81[CEU][hapmap];0.90[AMR][1000 genomes]
rs10788600	0.82[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs10788602	0.81[CEU][hapmap];0.93[AMR][1000 genomes]
rs10887821	0.82[CEU][hapmap];0.90[AMR][1000 genomes]
rs10887823	0.81[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes]
rs10887824	0.96[AMR][1000 genomes]
rs1169043	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1342450	0.86[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs1342456	0.96[AMR][1000 genomes]
rs1578696	0.83[CHB][hapmap]
rs1750274	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935579	0.81[CEU][hapmap];0.96[AMR][1000 genomes]
rs1935581	0.83[CHB][hapmap]
rs1935582	0.83[CHB][hapmap]
rs1935584	0.89[AMR][1000 genomes]
rs2096194	0.94[AMR][1000 genomes]
rs2185786	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209553	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes]
rs2312610	0.82[CEU][hapmap];0.96[AMR][1000 genomes]
rs2433340	0.80[CEU][hapmap]
rs2477954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2477956	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576159	0.82[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2576169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576176	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2576181	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765440	0.82[CHB][hapmap]
rs2765454	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2765456	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2872092	0.93[AMR][1000 genomes]
rs4509673	0.93[AMR][1000 genomes]
rs4596981	0.93[AMR][1000 genomes]
rs4606392	0.81[CEU][hapmap];0.96[AMR][1000 genomes]
rs4619060	0.93[AMR][1000 genomes]
rs4934404	0.81[CEU][hapmap];0.90[AMR][1000 genomes]
rs4934409	0.85[CEU][hapmap];0.96[AMR][1000 genomes]
rs4934411	0.81[CEU][hapmap];0.93[AMR][1000 genomes]
rs6586132	0.82[CEU][hapmap]
rs6586139	0.96[AMR][1000 genomes]
rs7899828	0.96[AMR][1000 genomes]
rs7909697	0.82[CEU][hapmap];0.93[AMR][1000 genomes]
rs7910594	0.82[JPT][hapmap];0.90[AMR][1000 genomes]
rs7911996	0.82[CEU][hapmap];0.90[AMR][1000 genomes]
rs7921352	0.80[CEU][hapmap];0.86[AMR][1000 genomes]
rs792208	0.81[CEU][hapmap];0.90[AMR][1000 genomes]
rs792211	0.89[AMR][1000 genomes]
rs792214	0.89[AMR][1000 genomes]
rs792215	0.90[AMR][1000 genomes]
rs792235	0.82[CEU][hapmap];0.89[AMR][1000 genomes]
rs7922551	0.93[AMR][1000 genomes]
rs806694	0.82[CEU][hapmap];0.89[AMR][1000 genomes]
rs813782	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs814242	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90248400-90249000	Enhancers	GM12878-XiMat	blood
2	chr10:90248600-90249600	Flanking Active TSS	Liver	Liver
3	chr10:90248600-90249600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:90248600-90249600	Enhancers	Fetal Lung	lung
5	chr10:90248600-90249600	Enhancers	Right Atrium	heart
6	chr10:90248800-90249400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:90248800-90249800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:90248800-90251400	Enhancers	Primary T cells from cord blood	blood

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