Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90284453..90286680-chr10:90293279..90295834,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10749590	0.81[AMR][1000 genomes]
rs10749591	0.81[AMR][1000 genomes]
rs10887823	0.81[AMR][1000 genomes]
rs10887824	0.81[AMR][1000 genomes]
rs1169043	0.81[AMR][1000 genomes]
rs1342450	0.81[AMR][1000 genomes]
rs1342456	0.81[AMR][1000 genomes]
rs1750274	0.81[AMR][1000 genomes]
rs1935579	0.81[AMR][1000 genomes]
rs2185786	0.81[AMR][1000 genomes]
rs2209553	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2312610	0.81[AMR][1000 genomes]
rs2437875	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2477954	0.85[AMR][1000 genomes]
rs2477956	0.81[AMR][1000 genomes]
rs2576159	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2576169	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2576170	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2576171	0.85[AMR][1000 genomes]
rs2576172	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2576181	0.81[AMR][1000 genomes]
rs2765456	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4606392	0.81[AMR][1000 genomes]
rs4934409	0.81[AMR][1000 genomes]
rs6586139	0.81[AMR][1000 genomes]
rs7899828	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90288600-90296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:90289000-90297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:90289200-90296000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:90289200-90296400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:90289400-90296400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:90290000-90296600	Weak transcription	HSMM	muscle
7	chr10:90290000-90297000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:90291600-90297000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:90291800-90296200	Weak transcription	Fetal Lung	lung
10	chr10:90292000-90296800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:90292000-90297400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:90293200-90294800	Enhancers	Liver	Liver
13	chr10:90293400-90293600	Enhancers	Psoas Muscle	Psoas

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