Variant report

Variant	nsv1056753
Chromosome Location	chr19:37963714-38015943
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:237)
CpG islands
(count:916)
Chromatin interactive
region (count:27)
LncRNA
region (count:36)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:237 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr19:37988680-37988750	K562	blood:	n/a	n/a
2	ATF2	chr19:37997130-37998206	H1-hESC	embryonic stem cell:	n/a	n/a
3	CEBPB	chr19:37988527-37988801	HepG2	liver:	n/a	chr19:37988660-37988671
4	CEBPB	chr19:37975405-37975728	A549	lung:	n/a	chr19:37975555-37975566
5	CEBPB	chr19:37988544-37988795	A549	lung:	n/a	chr19:37988660-37988671
6	CEBPB	chr19:37975201-37975803	A549	lung:	n/a	chr19:37975555-37975566
7	CEBPB	chr19:37975380-37975731	HepG2	liver:	n/a	chr19:37975555-37975566
8	CHD1	chr19:37996930-37998225	H1-hESC	embryonic stem cell:	n/a	n/a
9	CHD1	chr19:37997525-37997559	GM12878	blood:	n/a	n/a
10	CHD2	chr19:37996899-37998248	H1-hESC	embryonic stem cell:	n/a	n/a
11	CREB1	chr19:37997577-37998259	H1-hESC	embryonic stem cell:	n/a	n/a
12	CREB1	chr19:37997529-37998219	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr19:38000800-38000950	A549	lung:	n/a	n/a
14	CTCF	chr19:37996960-37997110	GM12873	blood:	n/a	n/a
15	CTCF	chr19:37996900-37997050	SK-N-SH_RA	brain:	n/a	n/a
16	CTCF	chr19:37987805-37987840	NHEK	skin:	n/a	n/a
17	CTCF	chr19:37990003-37990083	MCF-7	breast:	n/a	n/a
18	CTCF	chr19:38014680-38014830	K562	blood:	n/a	n/a
19	CTCF	chr19:37987760-37987910	WERI-Rb-1	eye:	n/a	n/a
20	CTCF	chr19:37997840-37997990	NHEK	skin:	n/a	n/a
21	CTCF	chr19:37987341-37987417	GM20000	blood:	n/a	n/a
22	CTCF	chr19:38001273-38001301	GM10248	blood:	n/a	n/a
23	CTCF	chr19:37997862-37997925	MCF-7	breast:	n/a	n/a
24	CTCF	chr19:37997860-37998010	SAEC	small airway:	n/a	n/a
25	CTCF	chr19:38002481-38002566	GM20000	blood:	n/a	n/a
26	CTCF	chr19:37997000-37997150	WERI-Rb-1	eye:	n/a	n/a
27	CTCF	chr19:37987700-37987850	HEK293	kidney:	n/a	n/a
28	CTCF	chr19:37987768-37987878	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chr19:37997375-37997400	Kidney_OC	kidney:	n/a	n/a
30	CTCF	chr19:37991280-37991430	WERI-Rb-1	eye:	n/a	n/a
31	CTCF	chr19:37997780-37997930	GM12871	blood:	n/a	n/a
32	CTCF	chr19:37987780-37987930	WERI-Rb-1	eye:	n/a	n/a
33	CTCF	chr19:37986655-37986737	GM13976	blood:	n/a	n/a
34	CTCF	chr19:37990011-37990107	MCF-7	breast:	n/a	n/a
35	EBF1	chr19:37992596-37992798	GM12878	blood:	n/a	n/a
36	EGR1	chr19:37997248-37998119	MCF-7	breast:	n/a	n/a
37	ELF1	chr19:37997340-37998324	MCF-7	breast:	n/a	n/a
38	ELF1	chr19:37997214-37998234	SK-N-SH	brain:	n/a	n/a
39	ELF1	chr19:37997810-37998183	GM12878	blood:	n/a	n/a
40	ELF1	chr19:37997082-37998294	MCF-7	breast:	n/a	n/a
41	ELF1	chr19:37997622-37998154	GM12878	blood:	n/a	n/a
42	ETS1	chr19:37975532-37976247	A549	lung:	n/a	n/a
43	FOS	chr19:37970423-37970623	HUVEC	blood vessel:	n/a	n/a
44	FOSL2	chr19:38010673-38011200	SK-N-SH	brain:	n/a	chr19:38011054-38011064 chr19:38010915-38010923 chr19:38011055-38011062 chr19:38011054-38011063 chr19:38010998-38011012 chr19:38010914-38010924 chr19:38010913-38010925 chr19:38011055-38011064 chr19:38011053-38011065 chr19:38010914-38010924 chr19:38010914-38010924
45	FOSL2	chr19:38010813-38011235	MCF-7	breast:	n/a	chr19:38011054-38011064 chr19:38010915-38010923 chr19:38011055-38011062 chr19:38011054-38011063 chr19:38010998-38011012 chr19:38010914-38010924 chr19:38010913-38010925 chr19:38011055-38011064 chr19:38011053-38011065 chr19:38010914-38010924 chr19:38010914-38010924
46	FOSL2	chr19:38010890-38011180	HepG2	liver:	n/a	chr19:38011054-38011064 chr19:38010915-38010923 chr19:38011055-38011062 chr19:38011054-38011063 chr19:38010998-38011012 chr19:38010914-38010924 chr19:38010913-38010925 chr19:38011055-38011064 chr19:38011053-38011065 chr19:38010914-38010924 chr19:38010914-38010924
47	FOXA1	chr19:37993230-37993531	HepG2	liver:	n/a	n/a
48	GATA2	chr19:37996809-37998133	SH-SY5Y	brain:	n/a	chr19:37997637-37997647 chr19:37997640-37997647 chr19:37997640-37997649
49	GATA2	chr19:37993139-37993370	K562	blood:	n/a	n/a
50	GATA3	chr19:37976958-37977145	SH-SY5Y	brain:	n/a	n/a

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37997991-37998041	MCF-7	breast:	n/a
2	chr19:37997991-37998041	MCF-7	breast:	n/a
3	chr19:37997675-37997725	SK-N-MC	brain:	n/a
4	chr19:37997831-37997881	HL-60	blood:	n/a
5	chr19:37997730-37997780	ovcar-3	ovarian:	n/a
6	chr19:37997867-37997917	HIPEpiC	eye:	n/a
7	chr19:37997703-37997753	A549	lung:	n/a
8	chr19:37997831-37997881	MCF10A-Er-Src	breast:	n/a
9	chr19:37998171-37998221	AoSMC	blood vessel:	n/a
10	chr19:37997817-37997867	H1-hESC	embryonic stem cell:	embryo
11	chr19:37997991-37998041	SK-N-SH	brain:	n/a
12	chr19:37997817-37997867	AG09309	skin:	n/a
13	chr19:37997675-37997725	SK-N-SH_RA	brain:	n/a
14	chr19:37995742-37995792	HCT-116	colon:	n/a
15	chr19:37997867-37997917	K562	blood:	n/a
16	chr19:37997675-37997725	GM06990	blood:	n/a
17	chr19:37997471-37997521	AG04449	skin:	fetal
18	chr19:37997798-37997848	ECC-1	luminal epithelium:	n/a
19	chr19:37997791-37997841	HRPEpiC	eye:	n/a
20	chr19:37997682-37997732	GM12878	blood:	n/a
21	chr19:37997471-37997521	HNPCEpiC	eye:	n/a
22	chr19:37999281-37999331	AG09319	gingival:	n/a
23	chr19:37997831-37997881	HCF	heart:	n/a
24	chr19:37997791-37997841	SK-N-SH	brain:	n/a
25	chr19:37997730-37997780	HepG2	liver:	n/a
26	chr19:37997798-37997848	Hepatocyte	liver:	n/a
27	chr19:37997867-37997917	GM06990	blood:	n/a
28	chr19:37997791-37997841	PANC-1	pancreas:	n/a
29	chr19:37997294-37997344	NH-A	brain:	n/a
30	chr19:37997791-37997841	HRE	kidney:	n/a
31	chr19:37997703-37997753	HL-60	blood:	n/a
32	chr19:37998171-37998221	SKMC	muscle:	n/a
33	chr19:37997730-37997780	NT2-D1	testis:	n/a
34	chr19:37997798-37997848	SK-N-MC	brain:	n/a
35	chr19:37995742-37995792	NT2-D1	testis:	n/a
36	chr19:37997791-37997841	GM12891	blood:	n/a
37	chr19:37997730-37997780	BE2_C	brain:	n/a
38	chr19:37997867-37997917	SK-N-MC	brain:	n/a
39	chr19:37997703-37997753	SK-N-MC	brain:	n/a
40	chr19:37997682-37997732	NT2-D1	testis:	n/a
41	chr19:37997791-37997841	Caco-2	colon:	n/a
42	chr19:37997675-37997725	NHBE	bronchial:	n/a
43	chr19:37997471-37997521	GM12878	blood:	n/a
44	chr19:37997991-37998041	GM12891	blood:	n/a
45	chr19:37997682-37997732	A549	lung:	n/a
46	chr19:37997798-37997848	HUVEC	blood vessel:	n/a
47	chr19:37997730-37997780	HCPEpiC	choroid plexus:	n/a
48	chr19:37997703-37997753	HEK293	kidney:	embryo
49	chr19:37997682-37997732	HIPEpiC	eye:	n/a
50	chr19:37997703-37997753	AoSMC	blood vessel:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:37991013..37994559-chr19:37994828..37997998,3	MCF-7	breast:
2	chr19:37982312..37984106-chr19:37993999..37996292,2	MCF-7	breast:
3	chr19:37992616..37995600-chr19:37995736..37998672,5	MCF-7	breast:
4	chr19:37995858..37997705-chr19:38268751..38270937,2	MCF-7	breast:
5	chr19:37955552..37960531-chr19:37996583..37998774,4	MCF-7	breast:
6	chr19:37997254..37999727-chr19:37999821..38001808,2	MCF-7	breast:
7	chr19:37973959..37975963-chr19:37997156..37999321,2	MCF-7	breast:
8	chr19:37974316..37976085-chr19:37997568..37999092,2	MCF-7	breast:
9	chr19:37996541..38000346-chr19:38000524..38005136,9	MCF-7	breast:
10	chr19:37996176..37999146-chr19:38209174..38211289,2	MCF-7	breast:
11	chr19:38002449..38004595-chr19:38006976..38008761,2	K562	blood:
12	chr19:37987631..37989871-chr19:37996181..37998149,2	MCF-7	breast:
13	chr19:37978934..37980953-chr19:37987940..37990198,2	MCF-7	breast:
14	chr19:37985665..37987976-chr19:37996433..37998090,2	MCF-7	breast:
15	chr19:37987631..37989871-chr19:37996181..37998149,2	MCF-7	breast:
16	chr19:37995579..37998422-chr19:38004137..38005715,3	MCF-7	breast:
17	chr19:37997834..37999595-chr19:38006917..38010053,3	MCF-7	breast:
18	chr19:37825178..37827025-chr19:37995882..37998065,2	MCF-7	breast:
19	chr19:38002449..38004595-chr19:38006976..38008761,2	K562	blood:
20	chr19:37959263..37961865-chr19:37965726..37969534,3	MCF-7	breast:
21	chr19:37970659..37972436-chr19:37977630..37979796,2	MCF-7	breast:
22	chr19:37957079..37959743-chr19:37967957..37970687,2	K562	blood:
23	chr11:65269953..65272188-chr19:37968874..37970374,2	K562	blood:
24	chr19:37980271..37981880-chr19:37996131..37997728,2	MCF-7	breast:
25	chr19:37992616..37995600-chr19:37995736..37998672,5	MCF-7	breast:
26	chr19:37960401..37962298-chr19:37962534..37964930,2	MCF-7	breast:
27	chr19:37957751..37961901-chr19:37996099..37999727,6	MCF-7	breast:

(count:36 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF569-5	chr19:37997485-37997526	ENSG00000266916.1
2	lnc-ZNF569-5	chr19:37989065-37989085	NONHSAT066122
3	lnc-ZNF569-5	chr19:37988250-37988494	NONHSAT066121
4	lnc-ZNF569-5	chr19:37997741-37998292	NONHSAT066119
5	lnc-ZNF569-5	chr19:37997485-37997702	NONHSAT066118
6	lnc-ZNF569-5	chr19:37996748-37996942	NONHSAT066122
7	lnc-ZNF570-3	chr19:37999167-37999305	NONHSAT066126
8	lnc-ZNF569-5	chr19:37988066-37988494	ENSG00000266916.1
9	lnc-ZNF569-5	chr19:37997741-37997869	ENSG00000266916.1
10	lnc-ZNF569-5	chr19:37988078-37988494	NONHSAT066116
11	lnc-ZNF569-5	chr19:37988926-37989077	ENSG00000266916.1
12	lnc-ZNF569-5	chr19:37997147-37997174	NONHSAT066117
13	lnc-ZNF569-5	chr19:37996748-37996942	ENSG00000266916.1
14	lnc-ZNF569-5	chr19:37996748-37996942	NONHSAT066116
15	lnc-ZNF569-5	chr19:37997089-37997133	NONHSAT066116
16	lnc-ZNF569-5	chr19:37988063-37988494	ENSG00000266916.1
17	lnc-ZNF569-5	chr19:37996874-37996942	ENSG00000266916.1
18	lnc-ZNF569-5	chr19:37996748-37996942	ENSG00000266916.1
19	lnc-ZNF569-5	chr19:37996748-37996947	NONHSAT066121
20	lnc-ZNF570-3	chr19:38013434-38013549	NONHSAT066125
21	lnc-ZNF569-5	chr19:37996481-37996942	ENSG00000266916.1
22	lnc-ZNF569-5	chr19:37997147-37997169	ENSG00000266916.1
23	lnc-ZNF569-5	chr19:37996748-37996942	NONHSAT066119
24	lnc-ZNF569-5	chr19:37988078-37988494	NONHSAT066117
25	lnc-ZNF569-5	chr19:37997741-37997948	ENSG00000266916.1
26	lnc-ZNF569-5	chr19:37996748-37996942	NONHSAT066117
27	lnc-ZNF569-5	chr19:37996748-37996942	NONHSAT066118
28	lnc-ZNF569-4	chr19:37994808-37995367	ENSG00000267115.1
29	lnc-ZNF569-5	chr19:37988200-37988494	NONHSAT066118
30	lnc-ZNF569-5	chr19:37997741-37998058	NONHSAT066122
31	lnc-ZNF569-5	chr19:37988265-37988494	ENSG00000266916.1
32	lnc-ZNF569-5	chr19:37988200-37988494	NONHSAT066119
33	lnc-ZNF570-3	chr19:37999167-37999305	NONHSAT066125
34	lnc-ZNF570-3	chr19:38014312-38014356	NONHSAT066125
35	lnc-ZNF570-2	chr19:37978901-37979554	ENSG00000267381.1
36	lnc-ZNF569-5	chr19:37988259-37988494	ENSG00000266916.1

No data

Variant related genes	Relation type
ENSG00000267115	TF binding region
ZNF793	TF binding region
ENSG00000266916	TF binding region
ZNF569	TF binding region
ENSG00000267381	TF binding region
ENSG00000267115	CpG island
ZNF793	CpG island
ENSG00000266916	CpG island
ZNF569	CpG island
ENSG00000267381	CpG island
ENSG00000196437	chromatin interactions
ENSG00000267381	chromatin interactions
ENSG00000266916	chromatin interactions
ENSG00000189144	chromatin interactions
ENSG00000267422	chromatin interactions
ENSG00000171827	chromatin interactions
ENSG00000188227	chromatin interactions
ENSG00000181666	chromatin interactions
ENSG00000198182	chromatin interactions
ENSG00000267115	chromatin interactions

Extended variants
information (count: 1698 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:1698 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182156594	chr19:37963725-37963726	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs187169962	chr19:37963833-37963834	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs562161121	chr19:37963889-37963890	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs368178958	chr19:37963930-37963931	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs113389297	chr19:37963936-37963937	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs541415503	chr19:37963964-37963965	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs139067187	chr19:37963967-37963968	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs563357689	chr19:37963988-37963989	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs530564625	chr19:37964085-37964086	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs191680640	chr19:37964117-37964118	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs562428033	chr19:37964118-37964119	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs183819243	chr19:37964133-37964134	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs534213134	chr19:37964164-37964165	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs528409540	chr19:37964201-37964202	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs148233604	chr19:37964238-37964239	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs201764115	chr19:37964240-37964241	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs372019347	chr19:37964301-37964302	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs546842749	chr19:37964331-37964332	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs568162381	chr19:37964340-37964341	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs112434542	chr19:37964345-37964346	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs550834691	chr19:37964346-37964347	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs569006722	chr19:37964377-37964378	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs539474857	chr19:37964394-37964395	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs190027614	chr19:37964396-37964397	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs572869091	chr19:37964476-37964477	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs534247695	chr19:37964487-37964488	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs555980798	chr19:37964504-37964505	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs145834738	chr19:37964518-37964519	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs544785529	chr19:37964557-37964558	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs148558939	chr19:37964562-37964563	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs575392021	chr19:37964566-37964567	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs368731897	chr19:37964573-37964574	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs78943691	chr19:37964575-37964576	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs563356343	chr19:37964590-37964591	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs558950376	chr19:37964596-37964597	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs193042272	chr19:37964631-37964632	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs528042611	chr19:37964668-37964669	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs2081096	chr19:37964700-37964701	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs562005209	chr19:37964777-37964778	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs2081095	chr19:37964798-37964799	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs144537157	chr19:37964832-37964833	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs374710871	chr19:37964946-37964947	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs569043510	chr19:37965098-37965099	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs536533418	chr19:37965138-37965139	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs539559971	chr19:37965205-37965206	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556887635	chr19:37965208-37965209	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35444569	chr19:37965229-37965230	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116801104	chr19:37965236-37965237	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185645591	chr19:37965250-37965251	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534157802	chr19:37965310-37965311	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	22522925	CNVD
Cystinuria	21255007	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1774 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37963800	Weak transcription	Colonic Mucosa	Colon
2	chr19:37961000-37964000	Weak transcription	Aorta	Aorta
3	chr19:37961000-37964400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr19:37961000-37965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:37961000-37966800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:37961000-37967800	Weak transcription	Pancreas	Pancrea
7	chr19:37961000-37973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
9	chr19:37961200-37964600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:37961200-37964600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:37961200-37967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:37961400-37963800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr19:37961400-37963800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr19:37961400-37963800	Weak transcription	Psoas Muscle	Psoas
15	chr19:37961400-37963800	Weak transcription	Right Ventricle	heart
16	chr19:37961400-37964000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:37961400-37964000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr19:37961400-37964000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr19:37961400-37964000	Weak transcription	NHLF	lung
20	chr19:37961400-37964200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:37961400-37964600	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:37961400-37965800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr19:37961400-37966200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr19:37961400-37966200	Weak transcription	Osteobl	bone
25	chr19:37961400-37966600	Weak transcription	Brain Angular Gyrus	brain
26	chr19:37961400-37966600	Weak transcription	Placenta	Placenta
27	chr19:37961400-37966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr19:37961400-37967000	Weak transcription	Fetal Heart	heart
29	chr19:37961400-37970600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
31	chr19:37961600-37964000	Weak transcription	Gastric	stomach
32	chr19:37961600-37966600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:37961800-37964000	Strong transcription	Thymus	Thymus
34	chr19:37961800-37967800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:37962200-37964000	Strong transcription	Left Ventricle	heart
36	chr19:37962200-37964000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr19:37962200-37964200	Strong transcription	Brain Hippocampus Middle	brain
38	chr19:37962200-37964600	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr19:37962200-37965000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr19:37962200-37965000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr19:37962200-37965000	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr19:37962200-37965000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:37962200-37965000	ZNF genes & repeats	Dnd41	blood
44	chr19:37962200-37965000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr19:37962200-37965200	ZNF genes & repeats	A549	lung
46	chr19:37962200-37966000	ZNF genes & repeats	Ovary	ovary
47	chr19:37962200-37967800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr19:37962200-37968600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
49	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links