Variant report

Variant	rs563357689
Chromosome Location	chr19:37963988-37963989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37960401..37962298-chr19:37962534..37964930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171827	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37964000	Weak transcription	Aorta	Aorta
2	chr19:37961000-37964400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr19:37961000-37965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:37961000-37966800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:37961000-37967800	Weak transcription	Pancreas	Pancrea
6	chr19:37961000-37973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
8	chr19:37961200-37964600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:37961200-37964600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr19:37961200-37967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:37961400-37964000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:37961400-37964000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:37961400-37964000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr19:37961400-37964000	Weak transcription	NHLF	lung
15	chr19:37961400-37964200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr19:37961400-37964600	Weak transcription	Colon Smooth Muscle	Colon
17	chr19:37961400-37965800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:37961400-37966200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:37961400-37966200	Weak transcription	Osteobl	bone
20	chr19:37961400-37966600	Weak transcription	Brain Angular Gyrus	brain
21	chr19:37961400-37966600	Weak transcription	Placenta	Placenta
22	chr19:37961400-37966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr19:37961400-37967000	Weak transcription	Fetal Heart	heart
24	chr19:37961400-37970600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
26	chr19:37961600-37964000	Weak transcription	Gastric	stomach
27	chr19:37961600-37966600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr19:37961800-37964000	Strong transcription	Thymus	Thymus
29	chr19:37961800-37967800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:37962200-37964000	Strong transcription	Left Ventricle	heart
31	chr19:37962200-37964000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr19:37962200-37964200	Strong transcription	Brain Hippocampus Middle	brain
33	chr19:37962200-37964600	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr19:37962200-37965000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:37962200-37965000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:37962200-37965000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr19:37962200-37965000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr19:37962200-37965000	ZNF genes & repeats	Dnd41	blood
39	chr19:37962200-37965000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr19:37962200-37965200	ZNF genes & repeats	A549	lung
41	chr19:37962200-37966000	ZNF genes & repeats	Ovary	ovary
42	chr19:37962200-37967800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr19:37962200-37968600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr19:37962200-37977800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr19:37962200-37977800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr19:37962400-37964000	Strong transcription	Fetal Kidney	kidney
49	chr19:37962400-37965000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
50	chr19:37962400-37968600	Strong transcription	Placenta Amnion	Placenta Amnion

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