Variant report

Variant	nsv1067541
Chromosome Location	chr19:35698638-35712439
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35711221..35713038-chr19:39340913..39342686,2	K562	blood:
2	chr19:35710097..35713394-chr19:35713828..35718765,5	K562	blood:
3	chr19:35706486..35711228-chr19:35738412..35741324,6	MCF-7	breast:
4	chr19:35699017..35701710-chr19:35704867..35706681,2	K562	blood:
5	chr19:35703283..35706238-chr19:35738621..35741297,3	MCF-7	breast:
6	chr19:35710070..35713514-chr19:35713713..35717849,5	K562	blood:
7	chr19:35707916..35709808-chr19:35710206..35712590,2	MCF-7	breast:
8	chr19:35711748..35715116-chr19:35794768..35797125,3	K562	blood:
9	chr19:35633583..35634463-chr19:35707432..35708405,8	MCF-7	breast:
10	chr19:35694392..35696589-chr19:35707373..35710054,2	K562	blood:
11	chr19:35634307..35636181-chr19:35704870..35707266,2	MCF-7	breast:
12	chr19:35612201..35614910-chr19:35707962..35710691,2	MCF-7	breast:
13	chr19:35633667..35635767-chr19:35707293..35708391,7	MCF-7	breast:
14	chr19:35699047..35700792-chr19:35711759..35713606,2	MCF-7	breast:
15	chr19:35689748..35692688-chr19:35698548..35701014,3	K562	blood:
16	chr19:35632266..35634042-chr19:35710575..35712827,2	K562	blood:
17	chr19:35699735..35702638-chr19:35738803..35741415,2	K562	blood:
18	chr19:35689192..35690781-chr19:35710324..35712969,2	K562	blood:
19	chr19:35615675..35617593-chr19:35708503..35710486,2	MCF-7	breast:
20	chr19:35707916..35709808-chr19:35710206..35712590,2	MCF-7	breast:
21	chr19:35709723..35716939-chr19:35736912..35742309,9	K562	blood:
22	chr19:35709988..35712709-chr19:35738668..35741573,3	K562	blood:
23	chr19:35699017..35701710-chr19:35704867..35706681,2	K562	blood:
24	chr19:35700181..35702948-chr19:35738888..35740935,3	MCF-7	breast:
25	chr19:35703379..35705750-chr19:35757891..35759671,2	K562	blood:
26	chr19:35711756..35713558-chr19:35723601..35726403,2	K562	blood:
27	chr19:35605173..35607007-chr19:35706718..35709027,2	MCF-7	breast:
28	chr19:35695503..35699438-chr19:35738444..35740953,4	MCF-7	breast:
29	chr19:35658448..35660082-chr19:35706961..35709327,2	K562	blood:
30	chr19:35632475..35634042-chr19:35710575..35712754,2	K562	blood:
31	chr19:35705011..35706655-chr19:35719234..35721990,2	K562	blood:
32	chr19:35705153..35708046-chr19:35947064..35948602,2	MCF-7	breast:
33	chr19:35699047..35700792-chr19:35711759..35713606,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LSR-1	chr19:35701776-35701887	XLOC_013049
2	lnc-LSR-1	chr19:35704060-35704688	XLOC_013049
3	lnc-LSR-1	chr19:35706538-35706774	XLOC_013049
4	lnc-LSR-1	chr19:35706538-35706788	NONHSAT065812
5	lnc-LSR-1	chr19:35706538-35706795	XLOC_013049
6	lnc-LSR-1	chr19:35706538-35706774	XLOC_013049
7	lnc-LSR-1	chr19:35706538-35706780	XLOC_013049

No data

Variant related genes	Relation type
ENSG00000104824	chromatin interactions
ENSG00000153902	chromatin interactions
ENSG00000221946	chromatin interactions
ENSG00000089356	chromatin interactions
ENSG00000177558	chromatin interactions
ENSG00000105699	chromatin interactions
ENSG00000262497	chromatin interactions
TMEM184B	miRNA target sites

Extended variants
information (count: 543 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:543 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377114016	chr19:35698646-35698647	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs543352849	chr19:35698652-35698653	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs559685405	chr19:35698763-35698764	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs372857206	chr19:35698779-35698780	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs114997152	chr19:35698815-35698816	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs551886375	chr19:35698837-35698838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs150604957	chr19:35698845-35698846	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs140266810	chr19:35698854-35698855	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs11275411	chr19:35698863-35698864	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs67356895	chr19:35698864-35698865	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs56863496	chr19:35698866-35698867	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs200220062	chr19:35698867-35698868	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs201477141	chr19:35698868-35698869	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs199632147	chr19:35698869-35698870	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs531034339	chr19:35698932-35698933	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs140719322	chr19:35698971-35698972	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs536724210	chr19:35698974-35698975	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs567696420	chr19:35699036-35699037	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs144695783	chr19:35699048-35699049	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs1633922	chr19:35699054-35699055	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs566527614	chr19:35699091-35699092	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs538416862	chr19:35699128-35699129	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs558344652	chr19:35699169-35699170	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs17541474	chr19:35699175-35699176	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs543907299	chr19:35699177-35699178	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs554141215	chr19:35699190-35699191	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs574415403	chr19:35699215-35699216	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs535357211	chr19:35699295-35699296	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs560025385	chr19:35699324-35699325	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs181935766	chr19:35699325-35699326	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs200315931	chr19:35699360-35699361	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs575737377	chr19:35699373-35699374	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs201317821	chr19:35699374-35699375	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs545586809	chr19:35699413-35699414	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs565480670	chr19:35699414-35699415	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs531020130	chr19:35699430-35699431	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs374845598	chr19:35699435-35699436	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs368639216	chr19:35699436-35699437	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs534524414	chr19:35699453-35699454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs551133773	chr19:35699454-35699455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs559290461	chr19:35699511-35699512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs567536133	chr19:35699533-35699534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs34419519	chr19:35699539-35699540	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs530136258	chr19:35699556-35699557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs149513101	chr19:35699557-35699558	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs149929632	chr19:35699589-35699590	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs56061947	chr19:35699600-35699601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs34461963	chr19:35699603-35699604	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs538557470	chr19:35699607-35699608	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs58271081	chr19:35699620-35699621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	21397856	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Neurodevelopmental disorder	22521361	CNVD
Endometrial cancer	23636398	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Gastric cancer	21811585	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	18160780	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:399 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35693400-35699400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr19:35693400-35707000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr19:35693600-35698800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr19:35693600-35701800	Weak transcription	Right Atrium	heart
5	chr19:35694000-35704400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr19:35694200-35699200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr19:35694200-35708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:35694600-35699200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:35694800-35699000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:35694800-35700200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:35695000-35698800	Enhancers	Fetal Thymus	thymus
12	chr19:35695200-35699200	Enhancers	Primary hematopoietic stem cells	blood
13	chr19:35696600-35700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr19:35696600-35701800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:35696600-35704600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:35696800-35704600	Weak transcription	Colonic Mucosa	Colon
17	chr19:35697000-35699000	Enhancers	K562	blood
18	chr19:35697200-35701600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr19:35697200-35702600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr19:35697200-35702800	Weak transcription	Spleen	Spleen
21	chr19:35697400-35698800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr19:35697400-35703200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:35697400-35704600	Weak transcription	Small Intestine	intestine
24	chr19:35697600-35702600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr19:35697800-35699200	Enhancers	Primary T cells from cord blood	blood
26	chr19:35697800-35702600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr19:35698000-35699200	Enhancers	GM12878-XiMat	blood
28	chr19:35698000-35701200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr19:35698000-35701800	Weak transcription	Thymus	Thymus
30	chr19:35698000-35701800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr19:35698000-35702600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr19:35698000-35702600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr19:35698000-35702600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr19:35698000-35708200	Enhancers	Primary B cells from peripheral blood	blood
35	chr19:35698000-35708200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr19:35698200-35708000	Enhancers	Primary B cells from cord blood	blood
37	chr19:35698600-35702600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr19:35698800-35699000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
39	chr19:35698800-35699200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:35698800-35701400	Weak transcription	Fetal Thymus	thymus
41	chr19:35699000-35699600	Weak transcription	Stomach Mucosa	stomach
42	chr19:35699000-35701600	Weak transcription	K562	blood
43	chr19:35699000-35702600	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr19:35699200-35700400	Weak transcription	Primary T cells from cord blood	blood
45	chr19:35699200-35700400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr19:35699200-35700600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr19:35699200-35701200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr19:35699200-35701800	Weak transcription	GM12878-XiMat	blood
49	chr19:35699200-35708000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:35699400-35701200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links