Variant report

Variant	rs56061947
Chromosome Location	chr19:35699600-35699601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35699047..35700792-chr19:35711759..35713606,2	MCF-7	breast:
2	chr19:35699017..35701710-chr19:35704867..35706681,2	K562	blood:
3	chr19:35689748..35692688-chr19:35698548..35701014,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1067541	chr19:35698638-35712439	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1066553	chr19:35698638-35749563	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35693400-35707000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr19:35693600-35701800	Weak transcription	Right Atrium	heart
3	chr19:35694000-35704400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr19:35694200-35708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:35694800-35700200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:35696600-35700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:35696600-35701800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:35696600-35704600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:35696800-35704600	Weak transcription	Colonic Mucosa	Colon
10	chr19:35697200-35701600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr19:35697200-35702600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr19:35697200-35702800	Weak transcription	Spleen	Spleen
13	chr19:35697400-35703200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:35697400-35704600	Weak transcription	Small Intestine	intestine
15	chr19:35697600-35702600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr19:35697800-35702600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr19:35698000-35701200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr19:35698000-35701800	Weak transcription	Thymus	Thymus
19	chr19:35698000-35701800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr19:35698000-35702600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr19:35698000-35702600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr19:35698000-35702600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr19:35698000-35708200	Enhancers	Primary B cells from peripheral blood	blood
24	chr19:35698000-35708200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr19:35698200-35708000	Enhancers	Primary B cells from cord blood	blood
26	chr19:35698600-35702600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr19:35698800-35701400	Weak transcription	Fetal Thymus	thymus
28	chr19:35699000-35699600	Weak transcription	Stomach Mucosa	stomach
29	chr19:35699000-35701600	Weak transcription	K562	blood
30	chr19:35699000-35702600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr19:35699200-35700400	Weak transcription	Primary T cells from cord blood	blood
32	chr19:35699200-35700400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr19:35699200-35700600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr19:35699200-35701200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr19:35699200-35701800	Weak transcription	GM12878-XiMat	blood
36	chr19:35699200-35708000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr19:35699400-35701200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links