Variant report

Variant	nsv1668
Chromosome Location	chr15:92585344-92635991
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:43)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:43 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:
2	chr15:92634147..92635552-chr15:92926425..92927394,9	MCF-7	breast:
3	chr15:92634017..92635135-chr15:92768858..92769903,6	MCF-7	breast:
4	chr15:92392604..92393548-chr15:92620316..92621247,3	MCF-7	breast:
5	chr15:92611564..92613241-chr15:92617063..92619542,2	MCF-7	breast:
6	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:
7	chr15:92249396..92250278-chr15:92620320..92621058,4	MCF-7	breast:
8	chr15:92392649..92393225-chr15:92625326..92625925,2	MCF-7	breast:
9	chr15:92399350..92399861-chr15:92620433..92621256,2	MCF-7	breast:
10	chr15:92634364..92635112-chr15:92926242..92926995,2	K562	blood:
11	chr15:92633756..92635582-chr15:92847071..92849602,2	K562	blood:
12	chr15:92396934..92399858-chr15:92625186..92627225,2	MCF-7	breast:
13	chr15:92617275..92618908-chr15:92634288..92637131,2	K562	blood:
14	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:
15	chr15:92429033..92430014-chr15:92620346..92621146,2	MCF-7	breast:
16	chr15:92584947..92586453-chr15:92587413..92590025,2	K562	blood:
17	chr15:92584947..92586453-chr15:92587413..92590025,2	K562	blood:
18	chr15:92617275..92618908-chr15:92634288..92637131,2	K562	blood:
19	chr15:92396773..92397541-chr15:92625734..92626532,2	MCF-7	breast:
20	chr15:92496027..92498083-chr15:92616983..92618525,2	MCF-7	breast:
21	chr15:92398412..92399161-chr15:92620330..92621178,2	MCF-7	breast:
22	chr15:92524405..92526013-chr15:92611226..92613057,2	MCF-7	breast:
23	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:
24	chr15:92398900..92399766-chr15:92625069..92626058,4	MCF-7	breast:
25	chr15:92582922..92584573-chr15:92591529..92593824,2	MCF-7	breast:
26	chr15:92634550..92635066-chr15:92849324..92850101,2	MCF-7	breast:
27	chr15:92396982..92397825-chr15:92620655..92621226,2	MCF-7	breast:
28	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:
29	chr15:92518566..92519642-chr15:92620200..92621254,3	MCF-7	breast:
30	chr15:92611564..92613241-chr15:92617063..92619542,2	MCF-7	breast:
31	chr15:92249653..92250271-chr15:92625240..92626013,2	MCF-7	breast:
32	chr15:92578004..92579721-chr15:92585811..92587645,2	K562	blood:
33	chr15:92392988..92393519-chr15:92621100..92621897,2	MCF-7	breast:
34	chr15:92605416..92607446-chr15:92609381..92611493,2	MCF-7	breast:
35	chr15:91846079..91846741-chr15:92625265..92626164,2	K562	blood:
36	chr15:92249467..92250303-chr15:92620269..92620810,2	MCF-7	breast:
37	chr15:92605416..92607446-chr15:92609381..92611493,2	MCF-7	breast:
38	chr15:92397561..92399407-chr15:92617258..92620011,2	MCF-7	breast:
39	chr15:92395446..92397598-chr15:92618443..92620616,2	MCF-7	breast:
40	chr15:92491023..92491875-chr15:92620592..92621159,2	MCF-7	breast:
41	chr15:92395627..92396664-chr15:92620274..92621236,6	MCF-7	breast:
42	chr15:92493959..92494719-chr15:92620479..92621114,2	MCF-7	breast:
43	chr15:92525546..92526372-chr15:92620334..92621094,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176463	chromatin interactions

Extended variants
information (count: 2135 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:2135 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543066646	chr15:92585359-92585360	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs371102114	chr15:92585408-92585409	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76406847	chr15:92585414-92585415	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542397721	chr15:92585427-92585428	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73536147	chr15:92585430-92585431	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs560144261	chr15:92585434-92585435	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs386786502	chr15:92585437-92585438	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs371128581	chr15:92585439-92585440	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565240570	chr15:92585451-92585452	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs8030627	chr15:92585478-92585479	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs550844398	chr15:92585489-92585490	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569003780	chr15:92585501-92585502	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs116113534	chr15:92585509-92585510	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7171206	chr15:92585514-92585515	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs547193804	chr15:92585550-92585551	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567099600	chr15:92585559-92585560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529877197	chr15:92585598-92585599	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs142931006	chr15:92585609-92585610	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548014960	chr15:92585624-92585625	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs184508126	chr15:92585637-92585638	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566588976	chr15:92585654-92585655	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536765496	chr15:92585679-92585680	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532303004	chr15:92585711-92585712	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35186188	chr15:92585727-92585728	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533825072	chr15:92585738-92585739	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs79061153	chr15:92585753-92585754	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372632353	chr15:92585767-92585768	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs1400788	chr15:92585771-92585772	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs189218076	chr15:92585790-92585791	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558593663	chr15:92585792-92585793	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs1400787	chr15:92585848-92585849	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs565159296	chr15:92585929-92585930	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548281755	chr15:92585937-92585938	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570452783	chr15:92585941-92585942	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139778346	chr15:92586063-92586064	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs115166827	chr15:92586068-92586069	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530214727	chr15:92586123-92586124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs1400786	chr15:92586139-92586140	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs556791348	chr15:92586217-92586218	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567015147	chr15:92586218-92586219	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs372643139	chr15:92586264-92586265	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574965688	chr15:92586350-92586351	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374870266	chr15:92586418-92586419	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs532715714	chr15:92586517-92586518	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552800306	chr15:92586524-92586525	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs367659428	chr15:92586543-92586544	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181859696	chr15:92586566-92586567	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542422826	chr15:92586636-92586637	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs8038348	chr15:92586641-92586642	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs111549922	chr15:92586659-92586660	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:986 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
3	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:92578000-92585600	Weak transcription	Spleen	Spleen
5	chr15:92579000-92587000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:92579400-92591200	Weak transcription	Ovary	ovary
7	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
8	chr15:92581200-92586600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:92581400-92586800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:92583800-92586000	Enhancers	Esophagus	oesophagus
11	chr15:92583800-92586400	Enhancers	Brain Substantia Nigra	brain
12	chr15:92583800-92587200	Enhancers	Fetal Heart	heart
13	chr15:92583800-92587400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:92583800-92588200	Enhancers	Right Atrium	heart
15	chr15:92584000-92586200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr15:92584000-92588000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:92584200-92585600	Weak transcription	Gastric	stomach
18	chr15:92584400-92585400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:92584400-92586200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:92584400-92586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:92584400-92587200	Weak transcription	Right Ventricle	heart
22	chr15:92584600-92585600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:92584600-92586200	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:92584600-92586600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:92584600-92587400	Weak transcription	Psoas Muscle	Psoas
26	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:92584800-92585600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:92584800-92585600	Enhancers	Brain Hippocampus Middle	brain
29	chr15:92584800-92587000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:92585000-92585800	Enhancers	Brain Anterior Caudate	brain
31	chr15:92585200-92585400	Enhancers	Fetal Brain Male	brain
32	chr15:92585200-92585600	Enhancers	Stomach Smooth Muscle	stomach
33	chr15:92585200-92585800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:92585200-92586000	Enhancers	Brain Angular Gyrus	brain
35	chr15:92585200-92587400	Enhancers	Lung	lung
36	chr15:92585200-92588200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:92585200-92588200	Enhancers	Left Ventricle	heart
38	chr15:92585400-92585600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:92585400-92585800	Enhancers	Fetal Lung	lung
40	chr15:92585400-92586000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
42	chr15:92585600-92586000	Enhancers	Gastric	stomach
43	chr15:92585600-92586200	Enhancers	Spleen	Spleen
44	chr15:92585600-92587600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:92585600-92591400	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:92585800-92586000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr15:92585800-92586200	Enhancers	Pancreas	Pancrea
48	chr15:92585800-92587800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:92585800-92588200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:92585800-92592600	Weak transcription	Brain Anterior Caudate	brain

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