Variant report

Variant	rs7171206
Chromosome Location	chr15:92585514-92585515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92584947..92586453-chr15:92587413..92590025,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7164111	1.00[AMR][1000 genomes]
rs7164114	1.00[AMR][1000 genomes]
rs7164885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036055	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
3	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:92578000-92585600	Weak transcription	Spleen	Spleen
5	chr15:92579000-92587000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:92579400-92591200	Weak transcription	Ovary	ovary
7	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
8	chr15:92581200-92586600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:92581400-92586800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:92583800-92586000	Enhancers	Esophagus	oesophagus
11	chr15:92583800-92586400	Enhancers	Brain Substantia Nigra	brain
12	chr15:92583800-92587200	Enhancers	Fetal Heart	heart
13	chr15:92583800-92587400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:92583800-92588200	Enhancers	Right Atrium	heart
15	chr15:92584000-92586200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr15:92584000-92588000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:92584200-92585600	Weak transcription	Gastric	stomach
18	chr15:92584400-92586200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:92584400-92586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:92584400-92587200	Weak transcription	Right Ventricle	heart
21	chr15:92584600-92585600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92584600-92586200	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:92584600-92586600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:92584600-92587400	Weak transcription	Psoas Muscle	Psoas
25	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:92584800-92585600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:92584800-92585600	Enhancers	Brain Hippocampus Middle	brain
28	chr15:92584800-92587000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:92585000-92585800	Enhancers	Brain Anterior Caudate	brain
30	chr15:92585200-92585600	Enhancers	Stomach Smooth Muscle	stomach
31	chr15:92585200-92585800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr15:92585200-92586000	Enhancers	Brain Angular Gyrus	brain
33	chr15:92585200-92587400	Enhancers	Lung	lung
34	chr15:92585200-92588200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr15:92585200-92588200	Enhancers	Left Ventricle	heart
36	chr15:92585400-92585600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:92585400-92585800	Enhancers	Fetal Lung	lung
38	chr15:92585400-92586000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain

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