Variant report

Variant	nsv365
Chromosome Location	chr11:66852591-66879246
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66861242..66864101-chr11:66886609..66888466,2	MCF-7	breast:
2	chr11:66878767..66880566-chr11:66884689..66887380,2	MCF-7	breast:
3	chr11:66872090..66874276-chr11:66882740..66884363,2	K562	blood:
4	chr11:66873988..66875768-chr11:66877376..66880066,2	MCF-7	breast:
5	chr11:66849303..66851043-chr11:66856225..66857731,2	MCF-7	breast:
6	chr11:66873611..66875559-chr11:66884875..66887591,2	K562	blood:
7	chr11:66873988..66875768-chr11:66877376..66880066,2	MCF-7	breast:
8	chr11:66864656..66866300-chr11:67006191..67007792,2	MCF-7	breast:
9	chr11:66861259..66863217-chr11:66865259..66868293,3	K562	blood:
10	chr11:66847116..66849049-chr11:66877078..66878803,2	MCF-7	breast:
11	chr11:66868215..66869893-chr11:66872876..66875422,2	K562	blood:
12	chr11:66868018..66871206-chr11:66883775..66886927,3	MCF-7	breast:
13	chr11:66878798..66882187-chr11:66883738..66887605,3	K562	blood:
14	chr11:66868215..66869893-chr11:66872876..66875422,2	K562	blood:
15	chr11:66873657..66876002-chr11:66881014..66882848,3	MCF-7	breast:
16	chr11:66862144..66862980-chr11:66935669..66936419,3	MCF-7	breast:
17	chr11:66876534..66882165-chr11:66883404..66887413,5	MCF-7	breast:
18	chr11:66864238..66866456-chr11:66880720..66884624,3	MCF-7	breast:
19	chr11:66866214..66867775-chr11:66886323..66888277,2	MCF-7	breast:
20	chr11:66871455..66873562-chr11:66884732..66886796,2	MCF-7	breast:
21	chr11:66861259..66863217-chr11:66865259..66868293,3	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM2A-2	chr11:66873885-66874221	NONHSAT022376
2	lnc-KDM2A-3	chr11:66870104-66870574	NONHSAT022375
3	lnc-RHOD-2	chr11:66862403-66863401	NONHSAT022374

No data

Variant related genes	Relation type
ENSG00000173120	chromatin interactions

Extended variants
information (count: 972 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:972 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192166777	chr11:66852605-66852606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567121866	chr11:66852622-66852623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534626386	chr11:66852631-66852632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183434169	chr11:66852688-66852689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371303238	chr11:66852711-66852712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188829281	chr11:66852756-66852757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs386754463	chr11:66852797-66852798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs538785905	chr11:66852806-66852807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs368773006	chr11:66852820-66852821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs575544884	chr11:66852941-66852942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192899923	chr11:66852957-66852958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs117419498	chr11:66852958-66852959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs12418591	chr11:66853030-66853031	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs182789725	chr11:66853031-66853032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187113699	chr11:66853032-66853033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs137976846	chr11:66853054-66853055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs143547841	chr11:66853120-66853121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11827639	chr11:66853170-66853171	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs144326276	chr11:66853177-66853178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs548438026	chr11:66853220-66853221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs78456211	chr11:66853235-66853236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148779606	chr11:66853267-66853268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs537249032	chr11:66853414-66853415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571196554	chr11:66853444-66853445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10791899	chr11:66853465-66853466	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs12362524	chr11:66853478-66853479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs142451540	chr11:66853488-66853489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs569046910	chr11:66853522-66853523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536468208	chr11:66853617-66853618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191491693	chr11:66853618-66853619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550940150	chr11:66853627-66853628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs183683440	chr11:66853638-66853639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs35490977	chr11:66853658-66853659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs533890922	chr11:66853666-66853667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139410982	chr11:66853694-66853695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs576851630	chr11:66853714-66853715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111310350	chr11:66853725-66853726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190402979	chr11:66853736-66853737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs56050608	chr11:66853791-66853792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562656020	chr11:66853830-66853831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574650118	chr11:66853842-66853843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs559011083	chr11:66853882-66853883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369656583	chr11:66853890-66853891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs193214398	chr11:66853911-66853912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144179922	chr11:66853927-66853928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs146550526	chr11:66853956-66853957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564876664	chr11:66853965-66853966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7927142	chr11:66854080-66854081	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs535126909	chr11:66854165-66854166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550662744	chr11:66854179-66854180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung cancer	19153074	CNVD
Schizophrenia	21346763	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
2	chr11:66851600-66862200	Weak transcription	A549	lung
3	chr11:66856000-66857000	Enhancers	K562	blood
4	chr11:66856400-66857000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:66856800-66858200	Weak transcription	Gastric	stomach
6	chr11:66857000-66858200	Weak transcription	K562	blood
7	chr11:66857000-66860800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:66858200-66858400	Enhancers	Gastric	stomach
9	chr11:66858200-66858400	Enhancers	K562	blood
10	chr11:66858400-66862600	Weak transcription	Gastric	stomach
11	chr11:66860800-66861400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:66861000-66861200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:66861000-66861200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:66861200-66866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:66861400-66862600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:66861400-66862600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:66862000-66862600	Enhancers	Placenta	Placenta
18	chr11:66862000-66862600	Active TSS	HepG2	liver
19	chr11:66862200-66863000	Enhancers	A549	lung
20	chr11:66862400-66862600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:66862400-66862800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr11:66862400-66862800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr11:66862400-66862800	Enhancers	Hela-S3	cervix
24	chr11:66862400-66863000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:66862400-66863000	Enhancers	Liver	Liver
26	chr11:66862400-66863000	Enhancers	K562	blood
27	chr11:66862400-66863200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:66862600-66862800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:66862600-66862800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:66862600-66862800	Flanking Active TSS	HepG2	liver
31	chr11:66862600-66863000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr11:66862600-66863000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:66862600-66863000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:66862600-66863000	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:66862600-66863200	Enhancers	Gastric	stomach
36	chr11:66862800-66863000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:66862800-66863000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:66862800-66863000	Flanking Bivalent TSS/Enh	HepG2	liver
39	chr11:66862800-66863200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:66863000-66863200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:66863000-66866000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:66863000-66867400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:66863000-66870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:66863000-66871200	Weak transcription	K562	blood
45	chr11:66863200-66867600	Weak transcription	Gastric	stomach
46	chr11:66865400-66866400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:66866000-66867000	Enhancers	Left Ventricle	heart
48	chr11:66866000-66867000	Enhancers	Right Atrium	heart
49	chr11:66866000-66867000	Enhancers	Right Ventricle	heart
50	chr11:66866000-66867200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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