Variant report

Variant	rs7927142
Chromosome Location	chr11:66854080-66854081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227695	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227697	0.91[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227703	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227713	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227715	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227723	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145414	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs61395951	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891316	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891317	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891342	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61891344	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591234	1.00[EUR][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes]
rs72926981	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
2	chr11:66851600-66862200	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links