Variant report

Variant	rs11227722
Chromosome Location	chr11:66928363-66928364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66927207..66929026-chr11:67082539..67085384,2	K562	blood:
2	chr11:66926847..66929328-chr11:66934758..66937261,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896161	0.83[ASN][1000 genomes]
rs10896165	0.87[AMR][1000 genomes]
rs11227671	0.87[AMR][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227689	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227695	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227697	0.86[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227715	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227718	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11227720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227723	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227732	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227750	0.87[AMR][1000 genomes]
rs11227751	0.87[AMR][1000 genomes]
rs11227752	0.87[AMR][1000 genomes]
rs11227761	1.00[AMR][1000 genomes]
rs11227765	1.00[AMR][1000 genomes]
rs11227768	0.87[AMR][1000 genomes]
rs11227770	1.00[AMR][1000 genomes]
rs11227786	0.83[AFR][1000 genomes]
rs11227787	0.83[AFR][1000 genomes]
rs12223898	1.00[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12282264	0.94[ASN][1000 genomes]
rs12293866	0.81[ASN][1000 genomes]
rs17145414	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3892143	1.00[AMR][1000 genomes]
rs55936319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56132056	1.00[AMR][1000 genomes]
rs59589410	0.87[AMR][1000 genomes]
rs61395951	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61758503	1.00[AMR][1000 genomes]
rs61758508	0.87[AMR][1000 genomes]
rs61889552	0.87[AMR][1000 genomes]
rs61891307	0.87[AMR][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891342	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891346	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6591234	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591235	0.94[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127431	1.00[AMR][1000 genomes]
rs72926981	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927142	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
2	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:66904400-66934000	Weak transcription	K562	blood
4	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
6	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:66907800-66928600	Weak transcription	NHLF	lung
8	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
9	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
10	chr11:66914400-66929000	Weak transcription	Stomach Mucosa	stomach
11	chr11:66918400-66928400	Weak transcription	HUVEC	blood vessel
12	chr11:66918600-66928400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:66918600-66928600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:66918600-66928800	Weak transcription	Brain Substantia Nigra	brain
15	chr11:66918600-66947200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:66918800-66928600	Weak transcription	NHEK	skin
17	chr11:66918800-66930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:66918800-66934000	Weak transcription	Left Ventricle	heart
19	chr11:66918800-66934600	Weak transcription	HMEC	breast
20	chr11:66918800-66935400	Weak transcription	HSMMtube	muscle
21	chr11:66918800-66936000	Weak transcription	Gastric	stomach
22	chr11:66918800-66947400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:66919200-66930400	Weak transcription	Small Intestine	intestine
25	chr11:66919400-66932000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:66919400-66934600	Weak transcription	NH-A	brain
27	chr11:66919400-66947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:66919600-66950400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:66919800-66928800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:66919800-66947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:66919800-66947400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:66919800-66947400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:66919800-66949600	Weak transcription	Lung	lung
34	chr11:66920000-66934800	Weak transcription	HepG2	liver
35	chr11:66920000-66947600	Weak transcription	Right Ventricle	heart
36	chr11:66920400-66928800	Weak transcription	Hela-S3	cervix
37	chr11:66920400-66947200	Weak transcription	Placenta	Placenta
38	chr11:66920400-66947400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:66920600-66933000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:66920800-66941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:66920800-66949200	Weak transcription	Fetal Kidney	kidney
42	chr11:66921200-66945200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:66921200-66946800	Weak transcription	Ovary	ovary
44	chr11:66921400-66930200	Weak transcription	Primary T cells from cord blood	blood
45	chr11:66921400-66930400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:66921400-66935600	Weak transcription	Dnd41	blood
47	chr11:66922000-66928800	Weak transcription	HSMM	muscle
48	chr11:66922000-66938000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:66922400-66928400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr11:66922400-66934600	Weak transcription	A549	lung

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