Variant report

Variant	rs61891346
Chromosome Location	chr11:66946807-66946808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66942292..66944561-chr11:66946334..66947954,2	MCF-7	breast:
2	chr11:66884756..66886465-chr11:66946415..66948664,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10791900	0.89[ASN][1000 genomes]
rs10896161	0.84[ASN][1000 genomes]
rs11227689	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227695	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227696	0.87[AMR][1000 genomes]
rs11227701	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227713	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227715	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11227732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227740	0.88[AFR][1000 genomes]
rs11227742	0.88[AFR][1000 genomes]
rs11227750	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227752	1.00[AMR][1000 genomes]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	0.83[ASN][1000 genomes]
rs12282264	0.94[ASN][1000 genomes]
rs12293866	0.81[ASN][1000 genomes]
rs17145414	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs58100805	0.85[AFR][1000 genomes]
rs61395951	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61891316	1.00[AMR][1000 genomes]
rs61891317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61891344	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6591234	0.94[ASN][1000 genomes]
rs6591235	0.94[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes]
rs72926981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
3	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
4	chr11:66918600-66947200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:66918800-66947400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:66919400-66947200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:66919600-66950400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:66919800-66947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:66919800-66947400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:66919800-66947400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:66919800-66949600	Weak transcription	Lung	lung
13	chr11:66920000-66947600	Weak transcription	Right Ventricle	heart
14	chr11:66920400-66947200	Weak transcription	Placenta	Placenta
15	chr11:66920400-66947400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:66920800-66949200	Weak transcription	Fetal Kidney	kidney
17	chr11:66922600-66947200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:66923000-66947400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:66923200-66947400	Weak transcription	Thymus	Thymus
20	chr11:66926000-66950400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:66926000-66966800	Weak transcription	Brain Angular Gyrus	brain
22	chr11:66926200-66948400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:66926200-66963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:66929000-66947600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:66929600-66947200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:66930600-66947400	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
28	chr11:66932400-66947200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:66932600-66947000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:66933400-66948600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:66934400-66947000	Weak transcription	Left Ventricle	heart
32	chr11:66934400-66948800	Weak transcription	Psoas Muscle	Psoas
33	chr11:66934400-66949200	Weak transcription	Esophagus	oesophagus
34	chr11:66934400-66950600	Weak transcription	Colonic Mucosa	Colon
35	chr11:66934400-66951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:66935400-66947200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:66935800-66947200	Weak transcription	NHEK	skin
38	chr11:66935800-66949600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:66936200-66947000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:66936200-66947000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:66936200-66947400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:66936200-66948000	Weak transcription	HSMMtube	muscle
43	chr11:66936400-66947400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:66936400-66947400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:66936400-66947400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:66936400-66947400	Weak transcription	HepG2	liver
47	chr11:66936400-66947400	Weak transcription	HMEC	breast
48	chr11:66936400-66947600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:66936400-66950400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:66936400-66956000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links