Variant report

Variant	rs12271777
Chromosome Location	chr11:66900730-66900731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66894856..66897785-chr11:66899004..66901222,2	K562	blood:
2	chr11:66896524..66901223-chr11:66901384..66904536,5	K562	blood:
3	chr11:66884732..66891772-chr11:66894798..66900811,8	K562	blood:
4	chr11:66899050..66903329-chr11:66906859..66910351,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10791900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227690	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227695	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227696	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227697	0.91[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227713	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227715	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227718	0.94[ASN][1000 genomes]
rs11227720	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227722	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227723	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227732	0.88[ASN][1000 genomes]
rs11227744	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11227746	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12273711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12274774	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12282264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17145414	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28604372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3730145	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55936319	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61395951	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891316	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891317	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891340	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891342	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891343	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61891344	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891346	0.83[ASN][1000 genomes]
rs6591234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591235	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7111473	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72926981	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946985	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7947663	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9630209	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66888800-66902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:66889000-66901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:66889200-66901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:66889800-66901400	Weak transcription	A549	lung
8	chr11:66889800-66902000	Weak transcription	HUVEC	blood vessel
9	chr11:66889800-66902200	Weak transcription	Aorta	Aorta
10	chr11:66889800-66902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:66889800-66903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:66890000-66901400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:66890000-66901600	Weak transcription	HSMMtube	muscle
15	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
16	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
17	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
21	chr11:66891200-66901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:66891400-66901200	Weak transcription	Pancreas	Pancrea
23	chr11:66891400-66903200	Weak transcription	Fetal Heart	heart
24	chr11:66891400-66908800	Strong transcription	Fetal Muscle Leg	muscle
25	chr11:66892200-66908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:66892400-66904400	Strong transcription	Thymus	Thymus
27	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:66893400-66906400	Strong transcription	Osteobl	bone
34	chr11:66893800-66907400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:66894000-66909000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose
37	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:66894600-66909800	Strong transcription	GM12878-XiMat	blood
39	chr11:66895000-66903600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:66895000-66909600	Strong transcription	Dnd41	blood
41	chr11:66895200-66915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:66895600-66911000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:66895800-66904400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:66895800-66911600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:66896000-66907600	Strong transcription	Fetal Lung	lung
47	chr11:66896200-66901800	Strong transcription	K562	blood
48	chr11:66896200-66909800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:66896400-66902000	Weak transcription	NH-A	brain
50	chr11:66896600-66901400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links