Variant report

Variant	rs11227703
Chromosome Location	chr11:66905294-66905295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66903289..66906523-chr11:66908304..66911328,3	MCF-7	breast:
2	chr11:66886293..66889522-chr11:66902915..66905693,3	MCF-7	breast:
3	chr11:66894492..66896363-chr11:66904063..66906211,2	K562	blood:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227697	0.91[ASN][1000 genomes]
rs11227701	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11227740	0.82[AFR][1000 genomes]
rs11227742	0.82[AFR][1000 genomes]
rs11227750	1.00[AMR][1000 genomes]
rs11227751	1.00[AMR][1000 genomes]
rs11227752	1.00[AMR][1000 genomes]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12282264	0.88[ASN][1000 genomes]
rs17145414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs61395951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61891344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6591234	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591235	0.88[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes]
rs72926981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
6	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
7	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
11	chr11:66891400-66908800	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:66892200-66908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:66893400-66906400	Strong transcription	Osteobl	bone
20	chr11:66893800-66907400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:66894000-66909000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose
23	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:66894600-66909800	Strong transcription	GM12878-XiMat	blood
25	chr11:66895000-66909600	Strong transcription	Dnd41	blood
26	chr11:66895200-66915800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:66895600-66911000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:66895800-66911600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:66896000-66907600	Strong transcription	Fetal Lung	lung
31	chr11:66896200-66909800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:66896600-66912800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:66896800-66907400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:66897200-66916000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:66897600-66907800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:66897600-66908000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:66897800-66905400	Strong transcription	Primary B cells from cord blood	blood
38	chr11:66897800-66908800	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:66898000-66906000	Strong transcription	HSMM	muscle
40	chr11:66898000-66909600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:66898200-66906000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:66898200-66911800	Strong transcription	Placenta	Placenta
43	chr11:66898200-66913000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:66898400-66915600	Strong transcription	Fetal Intestine Large	intestine
45	chr11:66898800-66906800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:66898800-66907800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:66899000-66907600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:66899200-66906600	Strong transcription	Brain Hippocampus Middle	brain
49	chr11:66899200-66908800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr11:66899200-66918400	Weak transcription	Small Intestine	intestine

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