Variant report

Variant	rs61891317
Chromosome Location	chr11:66899338-66899339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66888331..66890567-chr11:66897930..66899479,2	MCF-7	breast:
2	chr11:66894856..66897785-chr11:66899004..66901222,2	K562	blood:
3	chr11:66896524..66901223-chr11:66901384..66904536,5	K562	blood:
4	chr11:66884732..66891772-chr11:66894798..66900811,8	K562	blood:
5	chr11:66899050..66903329-chr11:66906859..66910351,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227697	0.97[ASN][1000 genomes]
rs11227701	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227740	0.82[AFR][1000 genomes]
rs11227742	0.82[AFR][1000 genomes]
rs11227750	1.00[AMR][1000 genomes]
rs11227751	1.00[AMR][1000 genomes]
rs11227752	1.00[AMR][1000 genomes]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12282264	0.83[ASN][1000 genomes]
rs17145414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs61395951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591234	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591235	0.83[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes]
rs72926981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946985	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66887800-66899600	Weak transcription	Spleen	Spleen
2	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:66888800-66902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:66889000-66899400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:66889000-66900000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:66889000-66901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:66889200-66901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:66889600-66899400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:66889600-66899800	Weak transcription	Colonic Mucosa	Colon
12	chr11:66889800-66900000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:66889800-66901400	Weak transcription	A549	lung
14	chr11:66889800-66902000	Weak transcription	HUVEC	blood vessel
15	chr11:66889800-66902200	Weak transcription	Aorta	Aorta
16	chr11:66889800-66902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:66889800-66903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:66890000-66901400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:66890000-66901600	Weak transcription	HSMMtube	muscle
21	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
22	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas
23	chr11:66890200-66899600	Weak transcription	Ovary	ovary
24	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:66890400-66909400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr11:66890800-66900200	Weak transcription	Fetal Brain Male	brain
27	chr11:66890800-66912600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
29	chr11:66891200-66900200	Weak transcription	Brain Angular Gyrus	brain
30	chr11:66891200-66901400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:66891400-66899400	Weak transcription	Brain Anterior Caudate	brain
32	chr11:66891400-66899400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:66891400-66899800	Weak transcription	Esophagus	oesophagus
34	chr11:66891400-66900000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:66891400-66901200	Weak transcription	Pancreas	Pancrea
36	chr11:66891400-66903200	Weak transcription	Fetal Heart	heart
37	chr11:66891400-66908800	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:66892200-66908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:66892400-66904400	Strong transcription	Thymus	Thymus
40	chr11:66892600-66914000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:66892800-66911800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:66892800-66912600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:66892800-66913000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:66893000-66899400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:66893400-66906400	Strong transcription	Osteobl	bone
48	chr11:66893800-66907400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:66894000-66909000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:66894200-66911400	Strong transcription	Adipose Nuclei	Adipose

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