Variant report

Variant	rs12273711
Chromosome Location	chr11:66871740-66871741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66871455..66873562-chr11:66884732..66886796,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10791900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227690	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227695	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227696	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227697	0.91[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227703	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227713	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227715	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227718	0.83[ASN][1000 genomes]
rs11227720	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227722	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227723	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227744	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11227746	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12271777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12274774	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12282264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17145414	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28604372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3730145	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55936319	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61395951	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891316	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891317	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891340	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891342	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891343	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61891344	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6591235	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926981	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947663	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630209	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv975118	chr11:66862674-66874347	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66867000-66873400	Weak transcription	Right Atrium	heart
2	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:66870000-66872200	Enhancers	Thymus	Thymus
4	chr11:66870200-66872600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr11:66870200-66873000	Enhancers	Fetal Thymus	thymus
6	chr11:66871200-66871800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:66871200-66871800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:66871200-66871800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:66871200-66872200	Enhancers	K562	blood
10	chr11:66871200-66872400	Enhancers	GM12878-XiMat	blood
11	chr11:66871200-66872600	Enhancers	Placenta	Placenta
12	chr11:66871400-66871800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:66871400-66872200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:66871600-66871800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:66871600-66871800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr11:66871600-66871800	Flanking Active TSS	Dnd41	blood
17	chr11:66871600-66872200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:66871600-66872400	Enhancers	Primary T cells from cord blood	blood
19	chr11:66871600-66872400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:66871600-66872600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:66871600-66872600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:66871600-66873000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr11:66871600-66884200	Weak transcription	H9 Cell Line	embryonic stem cell

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