Variant report

Variant	rs10896161
Chromosome Location	chr11:66973158-66973159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66949172..66951856-chr11:66972901..66974500,2	K562	blood:
2	chr11:66886667..66888418-chr11:66971964..66974300,2	K562	blood:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10791900	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10896165	0.84[EUR][1000 genomes]
rs11227687	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227690	0.93[AMR][1000 genomes]
rs11227713	0.83[ASN][1000 genomes]
rs11227715	0.83[ASN][1000 genomes]
rs11227718	0.83[ASN][1000 genomes]
rs11227720	0.83[ASN][1000 genomes]
rs11227722	0.83[ASN][1000 genomes]
rs11227723	0.83[ASN][1000 genomes]
rs11227732	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227740	1.00[EUR][1000 genomes]
rs11227742	1.00[EUR][1000 genomes]
rs11227744	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227745	1.00[EUR][1000 genomes]
rs11227746	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227750	1.00[EUR][1000 genomes]
rs11227751	1.00[EUR][1000 genomes]
rs11227752	1.00[EUR][1000 genomes]
rs11227761	0.84[EUR][1000 genomes]
rs12271777	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273711	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274774	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12282264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17145414	0.83[ASN][1000 genomes]
rs28604372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3730145	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58100805	1.00[EUR][1000 genomes]
rs61758508	0.84[EUR][1000 genomes]
rs61889551	0.84[EUR][1000 genomes]
rs61889552	0.84[EUR][1000 genomes]
rs61891340	0.83[ASN][1000 genomes]
rs61891342	0.83[ASN][1000 genomes]
rs61891343	0.81[ASN][1000 genomes]
rs61891344	0.83[ASN][1000 genomes]
rs61891346	0.84[ASN][1000 genomes]
rs6591234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6591235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7111473	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127431	0.84[EUR][1000 genomes]
rs7947663	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9630209	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
3	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
4	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
7	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
12	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
14	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:66953800-66978400	Weak transcription	K562	blood
16	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
17	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:66954800-66975000	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:66956000-66975000	Weak transcription	Spleen	Spleen
25	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
26	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:66962600-66974400	Weak transcription	NH-A	brain
29	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
30	chr11:66962800-66977400	Weak transcription	Esophagus	oesophagus
31	chr11:66963800-66974400	Weak transcription	NHLF	lung
32	chr11:66963800-66978400	Weak transcription	HSMMtube	muscle
33	chr11:66963800-66980400	Weak transcription	A549	lung
34	chr11:66964000-66975000	Weak transcription	Left Ventricle	heart
35	chr11:66964000-66975000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:66964000-66982800	Weak transcription	NHEK	skin
37	chr11:66964200-66975000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:66964400-66989400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:66965200-66974800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:66965200-66978200	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr11:66965200-67006400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:66965400-66975000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:66965400-66982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:66965800-66974200	Weak transcription	Fetal Kidney	kidney
46	chr11:66965800-66974800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:66965800-66975000	Weak transcription	HSMM	muscle
48	chr11:66966400-66989400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:66966600-66974000	Strong transcription	Fetal Thymus	thymus
50	chr11:66967000-66973200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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