Variant report

Variant	rs11227713
Chromosome Location	chr11:66916262-66916263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66822677..66825617-chr11:66914888..66917591,3	MCF-7	breast:
2	chr11:66914768..66917555-chr16:2198900..2201411,2	MCF-7	breast:
3	chr11:66886542..66888789-chr11:66915114..66917088,3	K562	blood:

Variant related genes	Relation type
ENSG00000167964	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000173156	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896161	0.83[ASN][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227689	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227697	0.86[ASN][1000 genomes]
rs11227701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227723	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227732	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs11227745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11227750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11227751	1.00[AMR][1000 genomes]
rs11227752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227755	1.00[JPT][hapmap]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12223898	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12274774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12282264	0.94[ASN][1000 genomes]
rs12293866	0.81[ASN][1000 genomes]
rs17145414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3730145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs61395951	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891346	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6591234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591235	0.94[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs72926981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9630209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv19488	chr11:66907429-66917095	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv555249	chr11:66908750-66916262	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv555250	chr11:66908750-66916676	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv555251	chr11:66908750-66916837	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv555252	chr11:66910826-66916392	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:66890200-66920000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
6	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:66899200-66918400	Weak transcription	Small Intestine	intestine
11	chr11:66900400-66921200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
13	chr11:66902400-66920600	Weak transcription	Ovary	ovary
14	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:66904000-66918000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:66904200-66919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:66904400-66918000	Weak transcription	Right Ventricle	heart
19	chr11:66904400-66918200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:66904400-66922800	Weak transcription	Colonic Mucosa	Colon
21	chr11:66904400-66934000	Weak transcription	K562	blood
22	chr11:66904600-66918000	Weak transcription	Fetal Brain Male	brain
23	chr11:66904600-66918200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:66904800-66917400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:66904800-66917400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:66904800-66918200	Weak transcription	HSMMtube	muscle
28	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
30	chr11:66905000-66916800	Weak transcription	Fetal Kidney	kidney
31	chr11:66905000-66917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:66905200-66918200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr11:66905200-66924600	Strong transcription	Fetal Intestine Small	intestine
34	chr11:66905200-66925200	Weak transcription	Brain Anterior Caudate	brain
35	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:66906200-66925600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:66906600-66917400	Weak transcription	NHEK	skin
38	chr11:66906600-66925600	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:66907600-66916800	Weak transcription	Fetal Lung	lung
40	chr11:66907600-66922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:66907800-66917400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:66907800-66918000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:66907800-66918000	Weak transcription	Gastric	stomach
44	chr11:66907800-66919000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:66907800-66928600	Weak transcription	NHLF	lung
46	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
47	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
48	chr11:66908000-66918000	Weak transcription	Spleen	Spleen
49	chr11:66908600-66918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:66908800-66918000	Weak transcription	Brain Germinal Matrix	brain

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