Variant report

Variant	rs11227732
Chromosome Location	chr11:66967721-66967722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10791900	0.94[ASN][1000 genomes]
rs10896161	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896165	0.84[EUR][1000 genomes]
rs11227687	0.81[ASN][1000 genomes]
rs11227689	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227690	0.83[ASN][1000 genomes]
rs11227695	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227696	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227697	0.81[ASN][1000 genomes]
rs11227701	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11227703	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11227713	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227715	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11227740	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11227742	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11227744	1.00[EUR][1000 genomes]
rs11227745	1.00[EUR][1000 genomes]
rs11227746	1.00[EUR][1000 genomes]
rs11227750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227761	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	0.88[ASN][1000 genomes]
rs12274774	0.84[EUR][1000 genomes]
rs12282264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293866	0.86[ASN][1000 genomes]
rs17145414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28604372	0.83[ASN][1000 genomes]
rs3730145	0.84[EUR][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs58100805	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61395951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61758508	0.84[EUR][1000 genomes]
rs61889551	0.84[EUR][1000 genomes]
rs61889552	0.84[EUR][1000 genomes]
rs61891311	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61891316	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61891317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61891344	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61891346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6591234	1.00[ASN][1000 genomes]
rs6591235	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72926981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7946985	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
4	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
5	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
9	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
14	chr11:66951600-66968000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
17	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:66953600-66968000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:66953800-66978400	Weak transcription	K562	blood
20	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
21	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
26	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:66954800-66975000	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:66956000-66975000	Weak transcription	Spleen	Spleen
29	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
30	chr11:66959000-66970400	Strong transcription	Primary T cells from cord blood	blood
31	chr11:66959600-66968200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:66959600-66969000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:66961000-66969400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:66961200-66969400	Strong transcription	Placenta	Placenta
35	chr11:66961400-66968000	Weak transcription	Gastric	stomach
36	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:66962600-66967800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:66962600-66967800	Weak transcription	Ovary	ovary
40	chr11:66962600-66972600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:66962600-66974400	Weak transcription	NH-A	brain
42	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
43	chr11:66962800-66977400	Weak transcription	Esophagus	oesophagus
44	chr11:66963000-66968000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:66963400-66969000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:66963800-66969800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:66963800-66974400	Weak transcription	NHLF	lung
48	chr11:66963800-66978400	Weak transcription	HSMMtube	muscle
49	chr11:66963800-66980400	Weak transcription	A549	lung
50	chr11:66964000-66967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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