Variant report

Variant	rs12293866
Chromosome Location	chr11:66968676-66968677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66962013..66964416-chr11:66967953..66970600,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10791900	0.81[ASN][1000 genomes]
rs11227713	0.81[ASN][1000 genomes]
rs11227715	0.81[ASN][1000 genomes]
rs11227718	0.81[ASN][1000 genomes]
rs11227720	0.81[ASN][1000 genomes]
rs11227722	0.81[ASN][1000 genomes]
rs11227723	0.81[ASN][1000 genomes]
rs11227732	0.86[ASN][1000 genomes]
rs12282264	0.86[ASN][1000 genomes]
rs17145414	0.81[ASN][1000 genomes]
rs61891340	0.81[ASN][1000 genomes]
rs61891342	0.81[ASN][1000 genomes]
rs61891344	0.81[ASN][1000 genomes]
rs61891346	0.81[ASN][1000 genomes]
rs6591234	0.86[ASN][1000 genomes]
rs6591235	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
2	chr11:66930800-66985600	Weak transcription	Small Intestine	intestine
3	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
4	chr11:66942600-66982800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:66945800-66984800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:66948000-66970600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:66948200-66975000	Weak transcription	Right Ventricle	heart
8	chr11:66948200-66986400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:66949600-66975000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:66951200-66975000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:66951200-66975000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:66951200-66986600	Weak transcription	Fetal Brain Male	brain
13	chr11:66953000-66975000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:66953400-66982800	Weak transcription	Aorta	Aorta
15	chr11:66953400-66982800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:66953800-66978400	Weak transcription	K562	blood
17	chr11:66953800-66982800	Weak transcription	HUVEC	blood vessel
18	chr11:66954000-66974600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:66954000-66976000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:66954000-66979400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:66954000-66984800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:66954400-66974600	Weak transcription	Brain Germinal Matrix	brain
23	chr11:66954600-66993000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:66954800-66975000	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:66956000-66975000	Weak transcription	Spleen	Spleen
26	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
27	chr11:66959000-66970400	Strong transcription	Primary T cells from cord blood	blood
28	chr11:66959600-66969000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:66961000-66969400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:66961200-66969400	Strong transcription	Placenta	Placenta
31	chr11:66962200-66999000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:66962400-66982800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:66962600-66972600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:66962600-66974400	Weak transcription	NH-A	brain
35	chr11:66962600-66995000	Weak transcription	Psoas Muscle	Psoas
36	chr11:66962800-66977400	Weak transcription	Esophagus	oesophagus
37	chr11:66963400-66969000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:66963800-66969800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:66963800-66974400	Weak transcription	NHLF	lung
40	chr11:66963800-66978400	Weak transcription	HSMMtube	muscle
41	chr11:66963800-66980400	Weak transcription	A549	lung
42	chr11:66964000-66975000	Weak transcription	Left Ventricle	heart
43	chr11:66964000-66975000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:66964000-66982800	Weak transcription	NHEK	skin
45	chr11:66964200-66975000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:66964400-66969400	Weak transcription	Hela-S3	cervix
47	chr11:66964400-66989400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:66965000-66969000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:66965200-66974800	Weak transcription	H1 Cell Line	embryonic stem cell

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