Variant report

Variant	rs10791900
Chromosome Location	chr11:66921295-66921296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66912440..66914149-chr11:66918816..66921683,2	K562	blood:
2	chr11:66882735..66884511-chr11:66919392..66921298,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10896161	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227689	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227690	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227695	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227696	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227697	0.86[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227703	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227718	1.00[ASN][1000 genomes]
rs11227720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227732	0.94[ASN][1000 genomes]
rs11227744	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11227746	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12271777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273711	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12274774	0.85[AMR][1000 genomes]
rs12282264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12293866	0.81[ASN][1000 genomes]
rs17145414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604372	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3730145	0.85[AMR][1000 genomes]
rs55936319	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61395951	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891316	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891317	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891340	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891343	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891346	0.89[ASN][1000 genomes]
rs6591234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591235	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7111473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72926981	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946985	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7947663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9630209	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:66890800-66923000	Strong transcription	Fetal Thymus	thymus
4	chr11:66893200-66923000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:66893200-66923400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:66894400-66922400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:66895600-66922000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
9	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:66904400-66922800	Weak transcription	Colonic Mucosa	Colon
12	chr11:66904400-66934000	Weak transcription	K562	blood
13	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
16	chr11:66905200-66924600	Strong transcription	Fetal Intestine Small	intestine
17	chr11:66905200-66925200	Weak transcription	Brain Anterior Caudate	brain
18	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:66906200-66925600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:66906600-66925600	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:66907600-66922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:66907800-66928600	Weak transcription	NHLF	lung
23	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
24	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
25	chr11:66908800-66925400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:66910400-66923000	Strong transcription	Fetal Muscle Leg	muscle
27	chr11:66910600-66921400	Strong transcription	Primary T cells from cord blood	blood
28	chr11:66911600-66925400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:66912800-66921800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:66913200-66922400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:66913600-66922400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:66914000-66921400	Strong transcription	Dnd41	blood
33	chr11:66914400-66921400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:66914400-66929000	Weak transcription	Stomach Mucosa	stomach
35	chr11:66914800-66923000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:66915000-66923000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:66916400-66922000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:66916600-66923000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:66916600-66923000	Strong transcription	Fetal Intestine Large	intestine
40	chr11:66916600-66924600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:66917000-66923000	Strong transcription	Fetal Stomach	stomach
42	chr11:66917400-66922800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:66917600-66922800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:66918000-66922000	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:66918000-66922800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:66918400-66925200	Weak transcription	Brain Angular Gyrus	brain
47	chr11:66918400-66925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr11:66918400-66928400	Weak transcription	HUVEC	blood vessel
49	chr11:66918600-66922200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:66918600-66924800	Weak transcription	H1 Cell Line	embryonic stem cell

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