Variant report

Variant	rs61891343
Chromosome Location	chr11:66924843-66924844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896161	0.81[ASN][1000 genomes]
rs10896165	0.87[AMR][1000 genomes]
rs11227671	0.87[AMR][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227689	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227695	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227697	0.83[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227715	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227718	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11227720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227723	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227732	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11227750	0.87[AMR][1000 genomes]
rs11227751	0.87[AMR][1000 genomes]
rs11227752	0.87[AMR][1000 genomes]
rs11227761	1.00[AMR][1000 genomes]
rs11227765	1.00[AMR][1000 genomes]
rs11227768	0.87[AMR][1000 genomes]
rs11227770	1.00[AMR][1000 genomes]
rs11227786	0.83[AFR][1000 genomes]
rs11227787	0.83[AFR][1000 genomes]
rs12223898	1.00[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12282264	0.91[ASN][1000 genomes]
rs17145414	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3892143	1.00[AMR][1000 genomes]
rs55936319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56132056	1.00[AMR][1000 genomes]
rs59589410	0.87[AMR][1000 genomes]
rs61395951	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61758503	1.00[AMR][1000 genomes]
rs61758508	0.87[AMR][1000 genomes]
rs61889552	0.87[AMR][1000 genomes]
rs61891307	0.87[AMR][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61891316	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891317	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891342	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891346	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6591234	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591235	0.91[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127431	1.00[AMR][1000 genomes]
rs72926981	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7927142	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7946985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66900400-66933800	Weak transcription	Esophagus	oesophagus
2	chr11:66903000-66934000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:66903400-66925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:66904400-66934000	Weak transcription	K562	blood
5	chr11:66904600-66928400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:66904800-66927200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:66904800-66930400	Weak transcription	Fetal Heart	heart
8	chr11:66905200-66925200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:66905600-66950400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:66906200-66925600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:66906600-66925600	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:66907800-66928600	Weak transcription	NHLF	lung
13	chr11:66907800-66953000	Weak transcription	Aorta	Aorta
14	chr11:66907800-66975000	Weak transcription	Pancreas	Pancrea
15	chr11:66908800-66925400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:66911600-66925400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:66914400-66929000	Weak transcription	Stomach Mucosa	stomach
18	chr11:66918400-66925200	Weak transcription	Brain Angular Gyrus	brain
19	chr11:66918400-66925400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:66918400-66928400	Weak transcription	HUVEC	blood vessel
21	chr11:66918600-66925200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:66918600-66925400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:66918600-66926800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:66918600-66926800	Weak transcription	Primary B cells from cord blood	blood
25	chr11:66918600-66927000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:66918600-66927000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:66918600-66927400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:66918600-66927600	Weak transcription	NHDF-Ad	bronchial
29	chr11:66918600-66928200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:66918600-66928400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:66918600-66928600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:66918600-66928800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:66918600-66947200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:66918800-66925400	Weak transcription	Osteobl	bone
35	chr11:66918800-66925600	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:66918800-66925800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:66918800-66926800	Weak transcription	Fetal Brain Male	brain
38	chr11:66918800-66928600	Weak transcription	NHEK	skin
39	chr11:66918800-66930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:66918800-66934000	Weak transcription	Left Ventricle	heart
41	chr11:66918800-66934600	Weak transcription	HMEC	breast
42	chr11:66918800-66935400	Weak transcription	HSMMtube	muscle
43	chr11:66918800-66936000	Weak transcription	Gastric	stomach
44	chr11:66918800-66947400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:66918800-66968000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:66919200-66930400	Weak transcription	Small Intestine	intestine
47	chr11:66919400-66925400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:66919400-66932000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:66919400-66934600	Weak transcription	NH-A	brain
50	chr11:66919400-66947200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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