Variant report

Variant	rs11227695
Chromosome Location	chr11:66892765-66892766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66886776..66888961-chr11:66889609..66894471,5	MCF-7	breast:
2	chr11:66845756..66848172-chr11:66890985..66894364,3	MCF-7	breast:
3	chr11:66885683..66889952-chr11:66890853..66894477,5	K562	blood:
4	chr11:66890779..66893752-chr11:67007455..67009235,2	K562	blood:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10791900	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227687	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11227689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227697	0.97[ASN][1000 genomes]
rs11227701	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227703	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227718	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11227720	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227732	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227750	1.00[AMR][1000 genomes]
rs11227751	1.00[AMR][1000 genomes]
rs11227752	1.00[AMR][1000 genomes]
rs11227761	0.87[AMR][1000 genomes]
rs11227765	0.87[AMR][1000 genomes]
rs11227770	0.87[AMR][1000 genomes]
rs12223898	0.87[AMR][1000 genomes]
rs12271777	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273711	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12282264	0.83[ASN][1000 genomes]
rs17145414	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28604372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3892143	0.87[AMR][1000 genomes]
rs55936319	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132056	0.87[AMR][1000 genomes]
rs61395951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61758503	0.87[AMR][1000 genomes]
rs61891311	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891346	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591234	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591235	0.83[ASN][1000 genomes]
rs7111473	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127431	0.87[AMR][1000 genomes]
rs72926981	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7946985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947663	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66887800-66899600	Weak transcription	Spleen	Spleen
2	chr11:66888600-66922600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:66888800-66892800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:66888800-66897600	Weak transcription	Stomach Mucosa	stomach
5	chr11:66888800-66898600	Weak transcription	Gastric	stomach
6	chr11:66888800-66902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:66888800-66907400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:66889000-66895600	Weak transcription	Right Ventricle	heart
9	chr11:66889000-66899400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:66889000-66900000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:66889000-66901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:66889000-66920400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:66889200-66899200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:66889200-66901600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:66889600-66896200	Weak transcription	NH-A	brain
16	chr11:66889600-66899200	Weak transcription	NHDF-Ad	bronchial
17	chr11:66889600-66899400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:66889600-66899800	Weak transcription	Colonic Mucosa	Colon
19	chr11:66889800-66893400	Weak transcription	NHLF	lung
20	chr11:66889800-66894600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:66889800-66895400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:66889800-66896000	Weak transcription	Fetal Brain Female	brain
23	chr11:66889800-66896000	Weak transcription	HMEC	breast
24	chr11:66889800-66896200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:66889800-66896200	Weak transcription	Fetal Kidney	kidney
26	chr11:66889800-66896200	Weak transcription	K562	blood
27	chr11:66889800-66899200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:66889800-66899200	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:66889800-66900000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:66889800-66901400	Weak transcription	A549	lung
31	chr11:66889800-66902000	Weak transcription	HUVEC	blood vessel
32	chr11:66889800-66902200	Weak transcription	Aorta	Aorta
33	chr11:66889800-66902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:66889800-66903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:66889800-66923400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:66890000-66893400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:66890000-66893600	Weak transcription	Primary T cells from cord blood	blood
38	chr11:66890000-66893600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:66890000-66893800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:66890000-66894400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:66890000-66894400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:66890000-66896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:66890000-66896200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:66890000-66898000	Weak transcription	HSMM	muscle
45	chr11:66890000-66898400	Weak transcription	Small Intestine	intestine
46	chr11:66890000-66898800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:66890000-66901400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:66890000-66901600	Weak transcription	HSMMtube	muscle
49	chr11:66890000-66908400	Strong transcription	Fetal Stomach	stomach
50	chr11:66890000-66912800	Weak transcription	Psoas Muscle	Psoas

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