Variant report

Variant	rs7111473
Chromosome Location	chr11:66861082-66861083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10791900	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896161	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11227689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227695	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227697	0.91[ASN][1000 genomes]
rs11227701	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227703	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11227713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227715	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227718	0.83[ASN][1000 genomes]
rs11227720	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227722	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11227740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227744	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11227745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227746	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11227750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227755	1.00[JPT][hapmap]
rs12271777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12273711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12282264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17145414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28604372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3730145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55936319	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61395951	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61891311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61891316	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891317	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891340	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891342	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61891343	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61891344	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6591235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72926981	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
2	chr11:66851600-66862200	Weak transcription	A549	lung
3	chr11:66858400-66862600	Weak transcription	Gastric	stomach
4	chr11:66860800-66861400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:66861000-66861200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:66861000-66861200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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