Variant report

Variant	rs11227745
Chromosome Location	chr11:67000616-67000617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66988845..66990484-chr11:67000195..67002705,2	K562	blood:
2	chr11:66995727..67000656-chr11:67007409..67009017,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10896161	1.00[EUR][1000 genomes]
rs10896165	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11227690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11227713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11227715	0.88[AFR][1000 genomes]
rs11227723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap]
rs11227732	1.00[EUR][1000 genomes]
rs11227740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227751	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227755	1.00[JPT][hapmap]
rs11227761	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227765	0.94[ASN][1000 genomes]
rs11227768	0.94[ASN][1000 genomes]
rs11227770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12223898	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12274774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12282264	1.00[EUR][1000 genomes]
rs17145414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs3730145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56132056	0.91[ASN][1000 genomes]
rs58100805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61758508	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61889551	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61889552	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61891316	0.88[AFR][1000 genomes]
rs61891344	0.88[AFR][1000 genomes]
rs61891586	0.83[ASN][1000 genomes]
rs61891588	0.83[ASN][1000 genomes]
rs61891589	0.81[ASN][1000 genomes]
rs61891590	0.81[ASN][1000 genomes]
rs6591234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6591235	0.85[EUR][1000 genomes]
rs7127431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9630209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv3328967	chr11:67000394-67001806	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66936400-67006200	Weak transcription	Stomach Mucosa	stomach
2	chr11:66956400-67005000	Weak transcription	Fetal Heart	heart
3	chr11:66964600-67002400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:66965200-67006400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:66972800-67002600	Strong transcription	Fetal Muscle Trunk	muscle
6	chr11:66973000-67005400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:66980400-67002200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:66980800-67005600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:66981000-67003800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:66981600-67005200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:66981800-67006400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:66982000-67005800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:66982400-67003800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:66982800-67002600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:66982800-67002600	Strong transcription	Adipose Nuclei	Adipose
16	chr11:66987000-67006000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:66990200-67002200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:66990400-67002200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:66990400-67003400	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:66990400-67004400	Strong transcription	Fetal Stomach	stomach
21	chr11:66990400-67005200	Strong transcription	Fetal Intestine Small	intestine
22	chr11:66990800-67002400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:66990800-67005400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:66991000-67002400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:66991000-67002400	Strong transcription	Fetal Intestine Large	intestine
26	chr11:66991200-67001200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:66994200-67002000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:66994400-67001800	Strong transcription	Osteobl	bone
29	chr11:66994400-67002400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:66994600-67001000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:66994600-67001600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:66994600-67002000	Strong transcription	Liver	Liver
33	chr11:66994600-67002200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:66994600-67002200	Strong transcription	Brain Substantia Nigra	brain
35	chr11:66994600-67002400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:66994600-67002400	Strong transcription	Dnd41	blood
37	chr11:66994800-67001400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:66994800-67002200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:66994800-67002400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:66995200-67001200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:66995200-67002000	Strong transcription	NH-A	brain
42	chr11:66995400-67002000	Strong transcription	Colon Smooth Muscle	Colon
43	chr11:66995800-67006400	Weak transcription	Fetal Brain Male	brain
44	chr11:66996200-67001200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:66996400-67006400	Weak transcription	Aorta	Aorta
46	chr11:66996400-67006400	Weak transcription	Ovary	ovary
47	chr11:66996600-67006400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:66996600-67006400	Weak transcription	Colonic Mucosa	Colon
49	chr11:66996600-67006400	Weak transcription	Psoas Muscle	Psoas
50	chr11:66996800-67005600	Weak transcription	Fetal Kidney	kidney

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