Variant report

Variant	rs61891590
Chromosome Location	chr11:67154284-67154285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67123847..67125489-chr11:67153212..67155903,2	K562	blood:
2	chr11:67120735..67122437-chr11:67152520..67155021,2	K562	blood:
3	chr11:67150184..67152712-chr11:67153679..67156991,4	K562	blood:
4	chr11:67150613..67154533-chr11:67231554..67235201,4	MCF-7	breast:
5	chr11:67056170..67057702-chr11:67153694..67156620,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172663	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000172932	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11227740	0.81[ASN][1000 genomes]
rs11227742	0.81[ASN][1000 genomes]
rs11227744	0.81[ASN][1000 genomes]
rs11227745	0.81[ASN][1000 genomes]
rs11227746	0.81[ASN][1000 genomes]
rs11227750	0.86[ASN][1000 genomes]
rs11227751	0.81[ASN][1000 genomes]
rs11227752	0.86[ASN][1000 genomes]
rs11227761	0.86[ASN][1000 genomes]
rs11227765	0.86[ASN][1000 genomes]
rs11227768	0.86[ASN][1000 genomes]
rs11227770	0.86[ASN][1000 genomes]
rs11227786	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11227787	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223898	0.86[ASN][1000 genomes]
rs12274774	0.86[ASN][1000 genomes]
rs17879849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3730145	0.86[ASN][1000 genomes]
rs56132056	0.83[ASN][1000 genomes]
rs58100805	0.81[ASN][1000 genomes]
rs61758508	0.86[ASN][1000 genomes]
rs61889551	0.86[ASN][1000 genomes]
rs61889552	0.86[ASN][1000 genomes]
rs61891586	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61891588	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61891589	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61891592	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127431	0.86[ASN][1000 genomes]
rs9630209	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
15	esv14294	chr11:67153088-67155398	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67145200-67158400	Weak transcription	Right Atrium	heart
2	chr11:67147000-67154400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:67147200-67158600	Weak transcription	Lung	lung
4	chr11:67147400-67158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:67147600-67156800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:67149000-67156600	Weak transcription	Colonic Mucosa	Colon
7	chr11:67150200-67154400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:67150200-67154400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:67150200-67156800	Weak transcription	Spleen	Spleen
10	chr11:67150200-67158200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:67150200-67158400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:67150200-67158600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:67150200-67158600	Weak transcription	Ovary	ovary
14	chr11:67150400-67154600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:67150400-67157600	Weak transcription	Right Ventricle	heart
16	chr11:67150600-67154600	Weak transcription	K562	blood
17	chr11:67152400-67154400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:67152400-67158400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:67152800-67156600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:67153000-67154400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:67153000-67156800	Weak transcription	Esophagus	oesophagus
22	chr11:67153000-67157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:67153000-67157200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:67153000-67158200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:67153000-67158200	Weak transcription	Brain Anterior Caudate	brain
26	chr11:67153000-67158200	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:67153000-67158200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:67153000-67158200	Weak transcription	HSMMtube	muscle
29	chr11:67153000-67158400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:67153000-67158400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:67153000-67158400	Weak transcription	Left Ventricle	heart
32	chr11:67153000-67158400	Weak transcription	HSMM	muscle
33	chr11:67153000-67158400	Weak transcription	NHDF-Ad	bronchial
34	chr11:67153000-67158400	Weak transcription	NHLF	lung
35	chr11:67153000-67158600	Weak transcription	Brain Angular Gyrus	brain
36	chr11:67153000-67158600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:67153200-67154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:67153200-67156800	Weak transcription	Pancreas	Pancrea
39	chr11:67153200-67157200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:67153200-67157200	Weak transcription	Hela-S3	cervix
41	chr11:67153200-67158200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:67153200-67158200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:67153200-67158400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:67153200-67158400	Weak transcription	Fetal Brain Male	brain
45	chr11:67153200-67158400	Weak transcription	Osteobl	bone
46	chr11:67153400-67157000	Weak transcription	Brain Germinal Matrix	brain
47	chr11:67153400-67157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:67153400-67158200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:67153800-67158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:67154000-67155400	Enhancers	A549	lung

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