Variant report

Variant	rs61891589
Chromosome Location	chr11:67148776-67148777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67083205..67091159-chr11:67142322..67150295,9	MCF-7	breast:
2	chr11:67029009..67031852-chr11:67147275..67148992,2	MCF-7	breast:
3	chr11:67117727..67123656-chr11:67146107..67152215,12	K562	blood:
4	chr11:67078742..67080478-chr11:67147614..67150583,2	MCF-7	breast:
5	chr11:67147040..67148988-chr11:67186808..67188399,2	K562	blood:
6	chr11:67028634..67031744-chr11:67145224..67149338,6	MCF-7	breast:
7	chr11:67083785..67086299-chr11:67148682..67150944,2	MCF-7	breast:
8	chr11:67148597..67151110-chr11:67271222..67275418,3	K562	blood:
9	chr11:67146395..67148840-chr11:67151114..67153909,2	K562	blood:
10	chr11:67113084..67113657-chr11:67148637..67149415,2	MCF-7	breast:
11	chr11:67032807..67039777-chr11:67144727..67150865,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172830	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000173020	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10896165	0.84[EUR][1000 genomes]
rs11227740	0.81[ASN][1000 genomes]
rs11227742	0.81[ASN][1000 genomes]
rs11227744	0.81[ASN][1000 genomes]
rs11227745	0.81[ASN][1000 genomes]
rs11227746	0.81[ASN][1000 genomes]
rs11227750	0.86[ASN][1000 genomes]
rs11227751	0.81[ASN][1000 genomes]
rs11227752	0.86[ASN][1000 genomes]
rs11227761	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227765	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227768	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227770	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11227786	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11227787	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12223898	0.86[ASN][1000 genomes]
rs12274774	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17879849	1.00[AMR][1000 genomes]
rs3730145	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56132056	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58100805	0.81[ASN][1000 genomes]
rs61758508	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61889551	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61889552	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891588	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61891590	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61891592	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7127431	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9630209	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67141800-67152200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:67142000-67149800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:67143200-67152000	Weak transcription	HSMMtube	muscle
4	chr11:67143400-67149800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:67143600-67149800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:67143600-67150000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:67143800-67152200	Weak transcription	Brain Anterior Caudate	brain
8	chr11:67144600-67149800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:67144600-67150200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:67145200-67158400	Weak transcription	Right Atrium	heart
11	chr11:67145400-67149800	Weak transcription	Right Ventricle	heart
12	chr11:67145400-67152200	Weak transcription	Pancreas	Pancrea
13	chr11:67145600-67149200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:67146000-67148800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:67146000-67150200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:67146000-67150200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:67146000-67150200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:67146200-67148800	Enhancers	Primary B cells from peripheral blood	blood
19	chr11:67146400-67150200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:67146600-67150200	Enhancers	Stomach Mucosa	stomach
21	chr11:67146800-67149600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:67147000-67149200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:67147000-67149200	Weak transcription	Spleen	Spleen
24	chr11:67147000-67154400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:67147200-67149800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:67147200-67149800	Weak transcription	Esophagus	oesophagus
27	chr11:67147200-67150000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:67147200-67150000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:67147200-67150400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:67147200-67158600	Weak transcription	Lung	lung
31	chr11:67147400-67149800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:67147400-67150000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:67147400-67150000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:67147400-67150600	Enhancers	A549	lung
35	chr11:67147400-67152200	Weak transcription	NHLF	lung
36	chr11:67147400-67152400	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:67147400-67158200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:67147600-67148800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:67147600-67149800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:67147600-67149800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:67147600-67149800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:67147600-67149800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:67147600-67149800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:67147600-67149800	Weak transcription	NHDF-Ad	bronchial
45	chr11:67147600-67150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:67147600-67150000	Weak transcription	Fetal Intestine Large	intestine
47	chr11:67147600-67150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:67147600-67150600	Enhancers	Hela-S3	cervix
49	chr11:67147600-67150600	Enhancers	K562	blood
50	chr11:67147600-67152000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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