Variant report

Variant	nsv430067
Chromosome Location	chr9:72080989-72116806
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr9:72109731-72109931	K562	blood:	n/a	n/a
2	BHLHE40	chr9:72089795-72090335	GM12878	blood:	n/a	n/a
3	CEBPB	chr9:72083337-72083612	HepG2	liver:	n/a	chr9:72083464-72083475 chr9:72083463-72083476
4	CEBPB	chr9:72086809-72086957	HepG2	liver:	n/a	chr9:72086839-72086850 chr9:72086837-72086848 chr9:72086837-72086850
5	CTCF	chr9:72091968-72092033	HepG2	liver:	n/a	n/a
6	CTCF	chr9:72089523-72089557	Lung_OC	lung:	n/a	n/a
7	CTCF	chr9:72091953-72092043	MCF-7	breast:	n/a	n/a
8	CTCF	chr9:72106347-72106437	Lung_OC	lung:	n/a	n/a
9	CTCF	chr9:72091968-72092057	A549	lung:	n/a	n/a
10	CTCF	chr9:72082708-72082743	GM10248	blood:	n/a	n/a
11	CTCF	chr9:72092014-72092027	MCF-7	breast:	n/a	n/a
12	CTCF	chr9:72110540-72110690	A549	lung:	n/a	chr9:72110556-72110574
13	CTCF	chr9:72091880-72092030	MCF-7	breast:	n/a	n/a
14	E2F6	chr9:72091544-72092120	H1-hESC	embryonic stem cell:	n/a	n/a
15	EBF1	chr9:72112364-72112592	GM12878	blood:	n/a	chr9:72112535-72112544 chr9:72112534-72112544 chr9:72112533-72112546 chr9:72112533-72112544
16	EBF1	chr9:72089882-72090243	GM12878	blood:	n/a	n/a
17	EP300	chr9:72089781-72090161	GM12878	blood:	n/a	chr9:72090060-72090076
18	EP300	chr9:72091026-72091146	GM12878	blood:	n/a	n/a
19	EP300	chr9:72089847-72090204	GM12878	blood:	n/a	chr9:72090060-72090076
20	EP300	chr9:72089801-72090204	GM12878	blood:	n/a	chr9:72090060-72090076
21	FOS	chr9:72100441-72100748	MCF10A-Er-Src	breast:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
22	FOS	chr9:72100508-72100705	MCF10A-Er-Src	breast:	n/a	chr9:72100595-72100604 chr9:72100596-72100605 chr9:72100595-72100605 chr9:72100596-72100603
23	FOS	chr9:72086368-72086728	MCF10A-Er-Src	breast:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086533-72086544 chr9:72086535-72086543 chr9:72086535-72086543
24	FOS	chr9:72086358-72086899	MCF10A-Er-Src	breast:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086533-72086544 chr9:72086535-72086543 chr9:72086535-72086543
25	FOS	chr9:72086314-72086725	HUVEC	blood vessel:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086533-72086544 chr9:72086535-72086543 chr9:72086535-72086543
26	FOS	chr9:72100421-72100761	MCF10A-Er-Src	breast:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
27	FOS	chr9:72086359-72086721	MCF10A-Er-Src	breast:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086533-72086544 chr9:72086535-72086543 chr9:72086535-72086543
28	FOS	chr9:72086364-72086895	MCF10A-Er-Src	breast:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086533-72086544 chr9:72086535-72086543 chr9:72086535-72086543
29	FOS	chr9:72100425-72100753	MCF10A-Er-Src	breast:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
30	FOSL2	chr9:72100394-72100775	HepG2	liver:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
31	FOSL2	chr9:72086259-72086774	SK-N-SH	brain:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086535-72086543 chr9:72086535-72086543
32	FOSL2	chr9:72100406-72100792	MCF-7	breast:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
33	FOSL2	chr9:72100485-72100773	MCF-7	breast:	n/a	chr9:72100489-72100498 chr9:72100595-72100605 chr9:72100596-72100603 chr9:72100595-72100604 chr9:72100596-72100605
34	FOXA1	chr9:72092324-72092607	HepG2	liver:	n/a	n/a
35	FOXA2	chr9:72085472-72085662	HepG2	liver:	n/a	n/a
36	FOXA2	chr9:72092189-72092715	A549	lung:	n/a	n/a
37	FOXA2	chr9:72085398-72085742	A549	lung:	n/a	n/a
38	FOXA2	chr9:72092091-72092834	A549	lung:	n/a	n/a
39	FOXA2	chr9:72085295-72085906	A549	lung:	n/a	n/a
40	GATA2	chr9:72087144-72087721	SH-SY5Y	brain:	n/a	chr9:72087371-72087378 chr9:72087371-72087378 chr9:72087371-72087378 chr9:72087369-72087379
41	GATA3	chr9:72100444-72100709	MCF-7	breast:	n/a	n/a
42	HEY1	chr9:72092307-72092528	K562	blood:	n/a	n/a
43	HEY1	chr9:72092356-72092543	K562	blood:	n/a	n/a
44	HNF4A	chr9:72085453-72085680	HepG2	liver:	n/a	chr9:72085596-72085611 chr9:72085597-72085609 chr9:72085602-72085610 chr9:72085596-72085611 chr9:72085595-72085610 chr9:72085603-72085611
45	HNF4A	chr9:72085467-72085753	HepG2	liver:	n/a	chr9:72085596-72085611 chr9:72085597-72085609 chr9:72085602-72085610 chr9:72085596-72085611 chr9:72085595-72085610 chr9:72085603-72085611
46	JUN	chr9:72109200-72109450	HepG2	liver:	n/a	chr9:72109317-72109330
47	JUN	chr9:72087054-72087189	H1-hESC	embryonic stem cell:	n/a	n/a
48	JUN	chr9:72107957-72108045	H1-hESC	embryonic stem cell:	n/a	n/a
49	JUN	chr9:72086367-72086696	HUVEC	blood vessel:	n/a	chr9:72086534-72086544 chr9:72086533-72086545 chr9:72086534-72086544 chr9:72086535-72086542 chr9:72086534-72086544 chr9:72086535-72086543 chr9:72086535-72086543
50	JUN	chr9:72082114-72082307	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:72081155-72081205	AG10803	skin:	n/a
2	chr9:72081155-72081205	Hepatocyte	liver:	n/a
3	chr9:72081155-72081205	Jurkat	blood:	n/a
4	chr9:72081155-72081205	AG04449	skin:	fetal
5	chr9:72081155-72081205	HCT-116	colon:	n/a
6	chr9:72081155-72081205	NH-A	brain:	n/a
7	chr9:72081155-72081205	HCM	heart:	n/a
8	chr9:72081155-72081205	HMEC	breast:	n/a
9	chr9:72081155-72081205	A549	lung:	n/a
10	chr9:72081155-72081205	ECC-1	luminal epithelium:	n/a
11	chr9:72081155-72081205	HPAEpiC	pulmonary alveolar:	n/a
12	chr9:72081155-72081205	MCF10A-Er-Src	breast:	n/a
13	chr9:72081155-72081205	PFSK-1	brain:	n/a
14	chr9:72081155-72081205	Hela-S3	cervix:	n/a
15	chr9:72081155-72081205	HAEpiC	amniotic membrane:	n/a
16	chr9:72081155-72081205	HRPEpiC	eye:	n/a
17	chr9:72081155-72081205	NB4	blood:	n/a
18	chr9:72081155-72081205	HIPEpiC	eye:	n/a
19	chr9:72081155-72081205	CMK	blood:	n/a
20	chr9:72081155-72081205	LNCaP	prostate:	n/a
21	chr9:72081155-72081205	HNPCEpiC	eye:	n/a
22	chr9:72081155-72081205	NT2-D1	testis:	n/a
23	chr9:72081155-72081205	T-47D	breast:	n/a
24	chr9:72081155-72081205	HCF	heart:	n/a
25	chr9:72081155-72081205	GM12892	blood:	n/a
26	chr9:72081155-72081205	Caco-2	colon:	n/a
27	chr9:72081155-72081205	HRCEpiC	kidney:	n/a
28	chr9:72081155-72081205	ovcar-3	ovarian:	n/a
29	chr9:72081155-72081205	IMR90	lung:	fetal
30	chr9:72081155-72081205	SAEC	small airway:	n/a
31	chr9:72081155-72081205	MCF-7	breast:	n/a
32	chr9:72081155-72081205	HL-60	blood:	n/a
33	chr9:72081155-72081205	AG09319	gingival:	n/a
34	chr9:72081155-72081205	U87	brain:	n/a
35	chr9:72081155-72081205	PrEC	prostate:	n/a
36	chr9:72081155-72081205	HUVEC	blood vessel:	n/a
37	chr9:72081155-72081205	HepG2	liver:	n/a
38	chr9:72081155-72081205	GM12878	blood:	n/a
39	chr9:72081155-72081205	BE2_C	brain:	n/a
40	chr9:72081155-72081205	HRE	kidney:	n/a
41	chr9:72081155-72081205	HEK293	kidney:	embryo
42	chr9:72081155-72081205	ProgFib	skin:	n/a
43	chr9:72081155-72081205	SK-N-SH	brain:	n/a
44	chr9:72081155-72081205	H1-hESC	embryonic stem cell:	embryo
45	chr9:72081155-72081205	AoSMC	blood vessel:	n/a
46	chr9:72081155-72081205	RPTEC	kidney:	n/a
47	chr9:72081155-72081205	AG04450	lung:	fetal
48	chr9:72081155-72081205	HEEpiC	esophagus:	n/a
49	chr9:72081155-72081205	BJ	skin:	n/a
50	chr9:72081155-72081205	NHDF-neo	bronchial:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:72113417..72115409-chr9:72425666..72428097,2	K562	blood:
2	chr9:72089155..72091732-chr9:72106824..72109478,2	MCF-7	breast:
3	chr9:72089279..72091764-chr9:72373318..72374835,2	MCF-7	breast:
4	chr9:72099255..72100862-chr9:72117750..72119500,2	MCF-7	breast:
5	chr9:72098374..72100350-chr9:72107226..72109233,2	MCF-7	breast:
6	chr9:72086703..72089641-chr9:72090516..72093121,4	MCF-7	breast:
7	chr9:72108434..72110396-chr9:72113331..72115330,2	MCF-7	breast:
8	chr9:72098374..72100350-chr9:72107226..72109233,2	MCF-7	breast:
9	chr9:72098831..72100503-chr9:72120147..72122522,2	MCF-7	breast:
10	chr9:72108434..72110396-chr9:72113331..72115330,2	MCF-7	breast:
11	chr9:72089155..72091732-chr9:72106824..72109478,2	MCF-7	breast:
12	chr9:72088172..72090177-chr9:72119590..72122551,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM189A2-1	chr9:72087382-72087506	ENSG00000229312.1
2	lnc-FAM189A2-1	chr9:72089179-72089268	ENSG00000229312.2
3	lnc-FAM189A2-1	chr9:72089179-72089269	ENSG00000229312.1
4	lnc-FAM189A2-1	chr9:72087382-72087506	ENSG00000229312.2
5	lnc-FAM189A2-1	chr9:72109203-72109429	ENSG00000229312.2
6	lnc-FAM189A2-1	chr9:72109203-72109429	ENSG00000229312.1

Variant related genes	Relation type
APBA1	TF binding region
ENSG00000229312	TF binding region
APBA1	CpG island
ENSG00000229312	CpG island
ENSG00000229312	chromatin interactions

Extended variants
information (count: 1236 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1236 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17081847	chr9:72080989-72080990	Strong transcription Weak transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs538866057	chr9:72081015-72081016	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs554082976	chr9:72081034-72081035	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs538626315	chr9:72081042-72081043	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs1619631	chr9:72081056-72081057	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs1009617	chr9:72081102-72081103	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs554554284	chr9:72081144-72081145	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs139310986	chr9:72081146-72081147	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs870695	chr9:72081232-72081233	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs564672267	chr9:72081234-72081235	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs533325209	chr9:72081239-72081240	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs545216044	chr9:72081270-72081271	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs191220404	chr9:72081275-72081276	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs149997162	chr9:72081280-72081281	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs870693	chr9:72081288-72081289	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs567646801	chr9:72081289-72081290	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs531644423	chr9:72081308-72081309	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182087797	chr9:72081367-72081368	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs145206441	chr9:72081377-72081378	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs538803410	chr9:72081391-72081392	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs547624533	chr9:72081425-72081426	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371961541	chr9:72081428-72081429	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs149129290	chr9:72081432-72081433	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs870694	chr9:72081462-72081463	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs71500366	chr9:72081480-72081481	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs575975112	chr9:72081508-72081509	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs536672843	chr9:72081560-72081561	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs572184864	chr9:72081620-72081621	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs185161085	chr9:72081689-72081690	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs576542775	chr9:72081714-72081715	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs74402548	chr9:72081771-72081772	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs189829802	chr9:72081831-72081832	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs183187151	chr9:72081850-72081851	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs529390570	chr9:72081945-72081946	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs146338474	chr9:72081977-72081978	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs188939258	chr9:72082009-72082010	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs561452183	chr9:72082022-72082023	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs368093730	chr9:72082054-72082055	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs2001699	chr9:72082094-72082095	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs550214231	chr9:72082204-72082205	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs565340856	chr9:72082241-72082242	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs532657870	chr9:72082293-72082294	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs1228285	chr9:72082326-72082327	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs565872870	chr9:72082451-72082452	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs191834557	chr9:72082474-72082475	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs548440935	chr9:72082480-72082481	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs577818939	chr9:72082531-72082532	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs569870449	chr9:72082581-72082582	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs551104112	chr9:72082593-72082594	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs183454911	chr9:72082595-72082596	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	17899364	CNVD
Mantle cell lymphoma	19029149	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Epilepsy	22083797	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:415 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72036600-72082600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72044200-72084400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:72045000-72084400	Weak transcription	Fetal Intestine Large	intestine
4	chr9:72046400-72085600	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72047000-72081800	Weak transcription	Fetal Kidney	kidney
6	chr9:72056000-72082600	Weak transcription	Pancreas	Pancrea
7	chr9:72064600-72084200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:72064600-72084200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:72064800-72083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:72066200-72081000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:72070600-72081000	Weak transcription	Brain Substantia Nigra	brain
12	chr9:72070800-72085600	Weak transcription	Gastric	stomach
13	chr9:72072400-72084000	Weak transcription	Fetal Heart	heart
14	chr9:72075200-72081200	Weak transcription	Fetal Lung	lung
15	chr9:72075600-72081200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:72077200-72086800	Weak transcription	Fetal Brain Male	brain
17	chr9:72077400-72081400	Weak transcription	Brain Anterior Caudate	brain
18	chr9:72077800-72082600	Weak transcription	Aorta	Aorta
19	chr9:72078400-72081400	Enhancers	Liver	Liver
20	chr9:72078400-72084000	Weak transcription	Placenta	Placenta
21	chr9:72079000-72081000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:72079000-72084000	Weak transcription	HUVEC	blood vessel
23	chr9:72079000-72086400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:72079000-72091600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:72079200-72086200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:72079600-72082200	Strong transcription	Fetal Stomach	stomach
27	chr9:72079600-72083000	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr9:72079800-72082400	Strong transcription	Spleen	Spleen
29	chr9:72079800-72082800	Strong transcription	Brain Germinal Matrix	brain
30	chr9:72079800-72085000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:72080000-72081000	Enhancers	Adipose Nuclei	Adipose
32	chr9:72080000-72081200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:72080000-72081600	Enhancers	Ovary	ovary
34	chr9:72080000-72083000	Strong transcription	Brain Cingulate Gyrus	brain
35	chr9:72080200-72081200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:72080200-72081400	Enhancers	Right Atrium	heart
37	chr9:72080200-72081400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:72080200-72081400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr9:72080200-72083200	Strong transcription	Brain Angular Gyrus	brain
40	chr9:72080400-72081200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:72080400-72081400	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr9:72080400-72082400	Strong transcription	Brain Hippocampus Middle	brain
43	chr9:72080400-72089400	Weak transcription	Fetal Thymus	thymus
44	chr9:72080600-72081400	Enhancers	Left Ventricle	heart
45	chr9:72080600-72081800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:72080600-72081800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:72080600-72082600	Strong transcription	Fetal Brain Female	brain
48	chr9:72080800-72081200	Enhancers	Fetal Muscle Trunk	muscle
49	chr9:72080800-72081400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:72080800-72081600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links