Variant report

Variant	nsv432924
Chromosome Location	chr6:77566201-77617213
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77406988..77407870-chr6:77586545..77587424,2	MCF-7	breast:
2	chr6:77418110..77418947-chr6:77570902..77571718,2	MCF-7	breast:
3	chr6:77563875..77566564-chr6:77568324..77570334,2	MCF-7	breast:
4	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
5	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
6	chr6:77599097..77600704-chr6:77603825..77605773,2	MCF-7	breast:
7	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
8	chr6:77570038..77572103-chr6:77580616..77583020,2	MCF-7	breast:
9	chr6:77563875..77566564-chr6:77568324..77570334,2	MCF-7	breast:
10	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:
11	chr6:76985498..76986021-chr6:77586428..77587326,2	MCF-7	breast:
12	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:
13	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
14	chr6:77392645..77395103-chr6:77585280..77587587,2	MCF-7	breast:
15	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:
16	chr6:77407039..77407928-chr6:77570847..77571390,2	MCF-7	breast:
17	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
18	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
19	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
20	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
21	chr6:76641897..76642417-chr6:77570899..77571594,2	MCF-7	breast:
22	chr6:77604565..77606843-chr6:77607602..77609316,2	MCF-7	breast:
23	chr6:77570038..77572103-chr6:77580616..77583020,2	MCF-7	breast:
24	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:
25	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649
2	lnc-MYO6-3	chr6:77599901-77599940	XLOC_005355

No data

Extended variants
information (count: 1177 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:1177 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4706636	chr6:77566201-77566202	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs547233830	chr6:77566222-77566223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529678182	chr6:77566238-77566239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs565881883	chr6:77566244-77566245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs9361158	chr6:77566249-77566250	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs557860343	chr6:77566252-77566253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144579279	chr6:77566262-77566263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569650119	chr6:77566270-77566271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs537081837	chr6:77566312-77566313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs566757940	chr6:77566347-77566348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs73758006	chr6:77566403-77566404	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs36023538	chr6:77566433-77566434	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376064698	chr6:77566465-77566466	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191086693	chr6:77566516-77566517	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554046252	chr6:77566538-77566539	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs78855505	chr6:77566653-77566654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs544952140	chr6:77566670-77566671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs545966323	chr6:77566720-77566721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs184502522	chr6:77566733-77566734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374910901	chr6:77566761-77566762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs531594486	chr6:77566771-77566772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs543364734	chr6:77566773-77566774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs114466717	chr6:77566812-77566813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs12203866	chr6:77566818-77566819	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs562769922	chr6:77566819-77566820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs12212233	chr6:77566834-77566835	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs73758007	chr6:77566839-77566840	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs557403500	chr6:77566862-77566863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs575682352	chr6:77566893-77566894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs533185196	chr6:77566901-77566902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs145711269	chr6:77566943-77566944	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs551625416	chr6:77566944-77566945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs9343518	chr6:77566966-77566967	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs5877511	chr6:77566976-77566977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs397886446	chr6:77566986-77566987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs79696748	chr6:77566987-77566988	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs74470656	chr6:77571007-77571008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556834248	chr6:77571058-77571059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs78786279	chr6:77571083-77571084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs6941496	chr6:77571085-77571086	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs563651982	chr6:77571129-77571130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs146121953	chr6:77571138-77571139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547163438	chr6:77571139-77571140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs77519563	chr6:77571149-77571150	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs546839157	chr6:77571182-77571183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185050109	chr6:77571244-77571245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs532622471	chr6:77571262-77571263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs551121654	chr6:77571264-77571265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs9350680	chr6:77571265-77571266	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs6921448	chr6:77571270-77571271	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77564400-77566400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:77566200-77566600	Weak transcription	Fetal Intestine Large	intestine
3	chr6:77566400-77566600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:77566600-77567000	Enhancers	Fetal Intestine Large	intestine
5	chr6:77571000-77571400	Enhancers	Liver	Liver
6	chr6:77571200-77571600	Enhancers	Ovary	ovary
7	chr6:77571400-77571600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:77571600-77572200	Enhancers	Osteobl	bone
9	chr6:77571600-77573200	Weak transcription	Ovary	ovary
10	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:77572200-77573200	Weak transcription	Osteobl	bone
12	chr6:77572200-77573800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:77572600-77573000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:77573200-77573600	Enhancers	Osteobl	bone
15	chr6:77573200-77574600	Enhancers	Ovary	ovary
16	chr6:77573600-77575600	Weak transcription	Osteobl	bone
17	chr6:77573800-77575600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:77575600-77576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:77575600-77576200	Enhancers	Osteobl	bone
20	chr6:77575800-77576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:77576200-77576600	Weak transcription	Osteobl	bone
22	chr6:77576200-77576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:77576600-77577000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:77576600-77577200	Enhancers	Aorta	Aorta
25	chr6:77576600-77577400	Enhancers	Osteobl	bone
26	chr6:77576800-77577000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:77576800-77577200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr6:77576800-77577200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:77576800-77577400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:77578400-77585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:77584000-77585400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:77585000-77585400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
33	chr6:77585000-77585400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:77585000-77585400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr6:77585000-77585400	Enhancers	Pancreas	Pancrea
36	chr6:77585000-77585600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr6:77585000-77585600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:77585200-77585400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
39	chr6:77585200-77585600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:77585200-77585600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr6:77585200-77585600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr6:77585200-77585600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr6:77585200-77585600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chr6:77585400-77586400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:77585400-77586600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:77585400-77586600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:77585400-77590800	Weak transcription	Pancreas	Pancrea
48	chr6:77585600-77586200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:77585600-77586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:77585600-77586200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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