Variant report
Variant | rs4706636 |
---|---|
Chromosome Location | chr6:77566201-77566202 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:77563875..77566564-chr6:77568324..77570334,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10455104 | 0.81[EUR][1000 genomes] |
rs10943383 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1156081 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1156082 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11758917 | 0.81[EUR][1000 genomes] |
rs12203866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12204609 | 0.82[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs12204639 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12208502 | 0.81[EUR][1000 genomes] |
rs12212233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13216684 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13219726 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1462476 | 0.91[EUR][1000 genomes] |
rs1563660 | 0.90[EUR][1000 genomes] |
rs1564071 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1599600 | 0.81[ASN][1000 genomes] |
rs1599601 | 0.87[AFR][1000 genomes] |
rs16888110 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1903696 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2315263 | 0.89[EUR][1000 genomes] |
rs28706823 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs34383988 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4708294 | 0.82[EUR][1000 genomes] |
rs6907072 | 0.90[EUR][1000 genomes] |
rs7748745 | 0.81[EUR][1000 genomes] |
rs7751083 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7767053 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9343511 | 0.92[EUR][1000 genomes] |
rs9350680 | 0.91[AFR][1000 genomes] |
rs9350681 | 0.91[AFR][1000 genomes] |
rs9352401 | 0.83[EUR][1000 genomes] |
rs9361158 | 0.87[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv830701 | chr6:77509152-77678602 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv432924 | chr6:77566201-77617213 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:77564400-77566400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
2 | chr6:77566200-77566600 | Weak transcription | Fetal Intestine Large | intestine |