Variant report

Variant	rs4708294
Chromosome Location	chr6:77575305-77575306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455104	0.92[EUR][1000 genomes]
rs11758917	0.92[EUR][1000 genomes]
rs12203866	0.82[EUR][1000 genomes]
rs12204609	0.97[EUR][1000 genomes]
rs12208502	0.92[EUR][1000 genomes]
rs12212233	0.80[EUR][1000 genomes]
rs13216684	0.82[EUR][1000 genomes]
rs1335426	0.86[AFR][1000 genomes]
rs34606836	0.89[EUR][1000 genomes]
rs4706636	0.82[EUR][1000 genomes]
rs4708293	0.98[AFR][1000 genomes]
rs4708295	0.98[AFR][1000 genomes]
rs7748745	0.92[EUR][1000 genomes]
rs7767053	0.82[EUR][1000 genomes]
rs9294030	0.98[AFR][1000 genomes]
rs9352401	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352402	0.98[AFR][1000 genomes]
rs9361161	0.88[AFR][1000 genomes]
rs9447819	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv528107	chr6:77573235-77576861	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:77573600-77575600	Weak transcription	Osteobl	bone
3	chr6:77573800-77575600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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