Variant report
| Variant | rs6907072 |
|---|---|
| Chromosome Location | chr6:77520993-77520994 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10455104 | 0.83[EUR][1000 genomes] |
| rs10943383 | 0.97[EUR][1000 genomes] |
| rs1156081 | 0.85[EUR][1000 genomes] |
| rs1156082 | 0.85[EUR][1000 genomes] |
| rs11758917 | 0.83[EUR][1000 genomes] |
| rs12203866 | 0.90[EUR][1000 genomes] |
| rs12204639 | 0.96[EUR][1000 genomes] |
| rs12206594 | 0.84[ASN][1000 genomes] |
| rs12208502 | 0.83[EUR][1000 genomes] |
| rs12212233 | 0.88[EUR][1000 genomes] |
| rs13216684 | 0.90[EUR][1000 genomes] |
| rs13219726 | 0.98[EUR][1000 genomes] |
| rs1462476 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1563660 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1564071 | 0.98[EUR][1000 genomes] |
| rs16888110 | 0.96[EUR][1000 genomes] |
| rs1903696 | 0.95[EUR][1000 genomes] |
| rs2315263 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28706823 | 0.96[EUR][1000 genomes] |
| rs34383988 | 0.96[EUR][1000 genomes] |
| rs34606836 | 0.80[EUR][1000 genomes] |
| rs4706636 | 0.90[EUR][1000 genomes] |
| rs7748745 | 0.83[EUR][1000 genomes] |
| rs7751083 | 0.92[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7767053 | 0.90[EUR][1000 genomes] |
| rs9343511 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv830701 | chr6:77509152-77678602 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6907072 | IRAK1BP1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:77499600-77530800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr6:77520400-77527200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
