Variant report
| Variant | rs1462476 |
|---|---|
| Chromosome Location | chr6:77515516-77515517 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:77515120..77518081-chr6:77536337..77538517,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10455104 | 0.83[EUR][1000 genomes] |
| rs10943383 | 0.96[EUR][1000 genomes] |
| rs1156081 | 0.84[EUR][1000 genomes] |
| rs1156082 | 0.84[EUR][1000 genomes] |
| rs11758917 | 0.83[EUR][1000 genomes] |
| rs12203866 | 0.91[EUR][1000 genomes] |
| rs12204639 | 0.97[EUR][1000 genomes] |
| rs12206594 | 0.86[ASN][1000 genomes] |
| rs12208502 | 0.83[EUR][1000 genomes] |
| rs12212233 | 0.89[EUR][1000 genomes] |
| rs13216684 | 0.91[EUR][1000 genomes] |
| rs13219726 | 0.97[EUR][1000 genomes] |
| rs1563660 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1564071 | 0.97[EUR][1000 genomes] |
| rs16888110 | 0.97[EUR][1000 genomes] |
| rs1903696 | 0.96[EUR][1000 genomes] |
| rs2315263 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28706823 | 0.97[EUR][1000 genomes] |
| rs34383988 | 0.97[EUR][1000 genomes] |
| rs34606836 | 0.81[EUR][1000 genomes] |
| rs4706636 | 0.91[EUR][1000 genomes] |
| rs6907072 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7748745 | 0.83[EUR][1000 genomes] |
| rs7751083 | 0.97[EUR][1000 genomes] |
| rs7767053 | 0.91[EUR][1000 genomes] |
| rs9343511 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019520 | chr6:77355212-77875164 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv538321 | chr6:77355212-77875164 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv886219 | chr6:77415155-77515516 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv830701 | chr6:77509152-77678602 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:77499600-77530800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr6:77513400-77519800 | Weak transcription | Pancreas | Pancrea |
