Variant report

Variant	rs12204639
Chromosome Location	chr6:77562914-77562915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455104	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10943383	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1156081	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1156082	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11758917	0.86[EUR][1000 genomes]
rs12203866	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208502	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12212233	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216684	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13219726	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1462476	0.97[EUR][1000 genomes]
rs1563660	0.96[EUR][1000 genomes]
rs1564071	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1599600	0.81[ASN][1000 genomes]
rs16888110	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1903696	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315263	0.95[EUR][1000 genomes]
rs28706823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34383988	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606836	0.83[EUR][1000 genomes]
rs4706636	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907072	0.96[EUR][1000 genomes]
rs7748745	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7751083	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7767053	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343511	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77561200-77563600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:77561400-77563600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:77561600-77564200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:77562200-77563400	Enhancers	Fetal Intestine Large	intestine
5	chr6:77562200-77563600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:77562200-77563800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:77562400-77563000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:77562400-77563000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:77562400-77563600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:77562600-77563400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:77562800-77565200	Enhancers	HUES48 Cell Line	embryonic stem cell

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