Variant report

Variant	rs1599600
Chromosome Location	chr6:77561564-77561565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12203866	0.81[ASN][1000 genomes]
rs12204639	0.81[ASN][1000 genomes]
rs12206598	0.88[ASN][1000 genomes]
rs12212233	0.81[ASN][1000 genomes]
rs1903696	0.81[ASN][1000 genomes]
rs34383988	0.81[ASN][1000 genomes]
rs4706636	0.81[ASN][1000 genomes]
rs7767053	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77560000-77562200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:77561000-77562400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:77561200-77563600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:77561400-77562400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:77561400-77563600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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