Variant report

Variant	nsv437089
Chromosome Location	chr9:79116975-79139590
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:79118137..79121617-chr9:79133678..79136692,4	MCF-7	breast:
2	chr9:79074775..79077434-chr9:79117333..79119392,2	MCF-7	breast:
3	chr9:79112993..79114512-chr9:79134842..79136491,2	MCF-7	breast:
4	chr9:79135787..79137939-chr9:79139543..79141153,2	MCF-7	breast:
5	chr9:79135787..79137939-chr9:79139543..79141153,2	MCF-7	breast:
6	chr9:79124487..79126454-chr9:79129345..79131796,2	MCF-7	breast:
7	chr9:79118137..79121617-chr9:79133678..79136692,4	MCF-7	breast:
8	chr9:79134186..79136452-chr9:79146465..79148525,2	MCF-7	breast:
9	chr9:79091609..79094063-chr9:79133864..79136159,2	MCF-7	breast:
10	chr9:79072653..79077214-chr9:79131036..79138388,12	MCF-7	breast:
11	chr9:79114955..79117396-chr9:79123792..79125800,2	MCF-7	breast:
12	chr9:79139154..79140841-chr9:79144087..79146483,2	MCF-7	breast:
13	chr9:79125526..79127916-chr9:79192388..79194020,2	MCF-7	breast:
14	chr9:79124487..79126454-chr9:79129345..79131796,2	MCF-7	breast:
15	chr9:79073735..79076536-chr9:79134165..79136426,5	MCF-7	breast:
16	chr9:79136748..79138792-chr9:79146274..79147861,2	MCF-7	breast:
17	chr9:79099514..79101931-chr9:79127814..79129631,2	MCF-7	breast:
18	chr9:79134746..79136889-chr9:79256489..79258709,2	MCF-7	breast:
19	chr9:79139489..79141014-chr9:79144768..79146907,2	MCF-7	breast:
20	chr9:79059311..79060843-chr9:79133319..79135511,2	MCF-7	breast:
21	chr9:79114955..79117396-chr9:79123792..79125800,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GCNT1-1	chr9:79131525-79131692	XLOC_007414
2	lnc-PCSK5-3	chr9:79117155-79117332	NONHSAT131951
3	lnc-GCNT1-1	chr9:79131410-79133074	NONHSAT131953

No data

Variant related genes	Relation type
ENSG00000187210	chromatin interactions

Extended variants
information (count: 910 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:910 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386735219	chr9:79116975-79116976	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs1983829	chr9:79116977-79116978	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs181889948	chr9:79116992-79116993	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs548532506	chr9:79116993-79116994	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs10114810	chr9:79117021-79117022	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs536687047	chr9:79117064-79117065	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10117913	chr9:79117071-79117072	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs71499157	chr9:79117072-79117073	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs199845175	chr9:79117093-79117094	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs200183737	chr9:79117094-79117095	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs5023813	chr9:79117095-79117096	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs202169128	chr9:79117096-79117097	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs5023814	chr9:79117097-79117098	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs5023815	chr9:79117099-79117100	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs71487610	chr9:79117101-79117102	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs71487611	chr9:79117103-79117104	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs200822189	chr9:79117105-79117106	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189443061	chr9:79117115-79117116	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs181795064	chr9:79117117-79117118	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs570457188	chr9:79117127-79117128	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs538820156	chr9:79117170-79117171	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs185143658	chr9:79117185-79117186	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs572337192	chr9:79117213-79117214	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs111590847	chr9:79117215-79117216	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs372805511	chr9:79117283-79117284	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs541302676	chr9:79117292-79117293	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs377021693	chr9:79117307-79117308	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs555006203	chr9:79117309-79117310	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs150904494	chr9:79117312-79117313	Strong transcription Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs369681886	chr9:79117388-79117389	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs139432893	chr9:79117391-79117392	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566193119	chr9:79117436-79117437	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs114812984	chr9:79117489-79117490	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs201588090	chr9:79117505-79117506	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs372014174	chr9:79117521-79117522	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189557173	chr9:79117531-79117532	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs138234792	chr9:79117542-79117543	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs77943551	chr9:79117551-79117552	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs145131054	chr9:79117556-79117557	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs375387461	chr9:79117557-79117558	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs139014455	chr9:79117570-79117571	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs368814183	chr9:79117571-79117572	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs373524012	chr9:79117588-79117589	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs142199715	chr9:79117617-79117618	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs149611385	chr9:79117653-79117654	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs113228037	chr9:79117654-79117655	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs141640466	chr9:79117695-79117696	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs150529677	chr9:79117703-79117704	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs140433187	chr9:79117712-79117713	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs373599348	chr9:79117730-79117731	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intellectual disability	22102821	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Melanoma	17363583	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:362 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:79080800-79117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:79081800-79117200	Weak transcription	Gastric	stomach
4	chr9:79082600-79117600	Weak transcription	NHLF	lung
5	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
6	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
7	chr9:79093600-79117200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:79093800-79117000	Weak transcription	HMEC	breast
9	chr9:79093800-79118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:79094200-79120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:79097200-79117200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:79103800-79117200	Weak transcription	Lung	lung
13	chr9:79103800-79117800	Weak transcription	Thymus	Thymus
14	chr9:79104200-79117400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:79104400-79117400	Weak transcription	Small Intestine	intestine
16	chr9:79104600-79117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:79105800-79117200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:79106200-79117200	Weak transcription	HUVEC	blood vessel
19	chr9:79108000-79117200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:79108200-79117800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:79108800-79117200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:79109200-79117200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:79109200-79117200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:79109400-79117200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:79109400-79117200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:79110400-79117400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:79110600-79117000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr9:79112000-79117800	Weak transcription	Fetal Intestine Small	intestine
29	chr9:79112000-79120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:79112600-79117200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:79113400-79117200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:79113800-79117400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:79114000-79117400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:79114400-79117000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr9:79114400-79120200	Weak transcription	Pancreas	Pancrea
36	chr9:79114400-79122800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:79115000-79122600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:79115200-79119200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:79115200-79119800	Strong transcription	Primary B cells from cord blood	blood
40	chr9:79115200-79120400	Strong transcription	Fetal Intestine Large	intestine
41	chr9:79115400-79117200	Weak transcription	HSMMtube	muscle
42	chr9:79115400-79117800	Weak transcription	NH-A	brain
43	chr9:79115400-79120400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:79115600-79117600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr9:79115600-79117600	Weak transcription	Stomach Mucosa	stomach
46	chr9:79115600-79118000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:79115600-79120800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:79115800-79118200	Genic enhancers	HSMM	muscle
49	chr9:79115800-79118400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:79115800-79118600	Genic enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links