Variant report

Variant	rs555006203
Chromosome Location	chr9:79117309-79117310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79114955..79117396-chr9:79123792..79125800,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCSK5-3	chr9:79117155-79117332	NONHSAT131951

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv893480	chr9:79115844-79222584	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv437089	chr9:79116975-79139590	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79075600-79117800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:79082600-79117600	Weak transcription	NHLF	lung
3	chr9:79087600-79117400	Weak transcription	Colonic Mucosa	Colon
4	chr9:79093400-79142800	Weak transcription	Fetal Stomach	stomach
5	chr9:79093800-79118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:79094200-79120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:79103800-79117800	Weak transcription	Thymus	Thymus
8	chr9:79104200-79117400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:79104400-79117400	Weak transcription	Small Intestine	intestine
10	chr9:79104600-79117600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:79108200-79117800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:79110400-79117400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:79112000-79117800	Weak transcription	Fetal Intestine Small	intestine
14	chr9:79112000-79120400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:79113800-79117400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:79114000-79117400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:79114400-79120200	Weak transcription	Pancreas	Pancrea
18	chr9:79114400-79122800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:79115000-79122600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:79115200-79119200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:79115200-79119800	Strong transcription	Primary B cells from cord blood	blood
22	chr9:79115200-79120400	Strong transcription	Fetal Intestine Large	intestine
23	chr9:79115400-79117800	Weak transcription	NH-A	brain
24	chr9:79115400-79120400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr9:79115600-79117600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:79115600-79117600	Weak transcription	Stomach Mucosa	stomach
27	chr9:79115600-79118000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:79115600-79120800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:79115800-79118200	Genic enhancers	HSMM	muscle
30	chr9:79115800-79118400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:79115800-79118600	Genic enhancers	Osteobl	bone
32	chr9:79115800-79118800	Genic enhancers	Muscle Satellite Cultured Cells	--
33	chr9:79116000-79117800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:79116000-79117800	Weak transcription	Spleen	Spleen
35	chr9:79116000-79119400	Weak transcription	Left Ventricle	heart
36	chr9:79116200-79118000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:79116200-79118000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:79116200-79118800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr9:79116200-79119800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr9:79116400-79118800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:79116400-79118800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr9:79116400-79119000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:79116400-79119600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr9:79116400-79119800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:79116400-79119800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:79116600-79118200	Weak transcription	Fetal Muscle Leg	muscle
47	chr9:79116600-79118800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:79116600-79118800	Strong transcription	NHDF-Ad	bronchial
49	chr9:79116600-79119000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:79116600-79119000	Strong transcription	GM12878-XiMat	blood

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