Variant report

Variant	nsv437653
Chromosome Location	chr10:4304810-4314845
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:3783756..3786334-chr10:4310563..4312608,2	MCF-7	breast:
2	chr10:4216133..4216654-chr10:4309278..4309857,2	MCF-7	breast:
3	chr10:3825342..3830573-chr10:4304925..4310190,7	MCF-7	breast:
4	chr10:3827486..3828068-chr10:4309220..4310177,2	MCF-7	breast:
5	chr10:4301639..4303870-chr10:4304089..4305971,2	MCF-7	breast:
6	chr10:4304386..4306768-chr10:4318241..4320361,3	MCF-7	breast:
7	chr10:3825089..3830045-chr10:4313155..4317076,5	MCF-7	breast:
8	chr10:4311023..4313207-chr10:4318720..4320518,2	K562	blood:
9	chr10:3823986..3829739-chr10:4306109..4310504,8	MCF-7	breast:
10	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067082	chromatin interactions

Extended variants
information (count: 439 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:439 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11595086	chr10:4304810-4304811	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs116725390	chr10:4304812-4304813	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs187758960	chr10:4304824-4304825	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs367926565	chr10:4304829-4304830	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs556112285	chr10:4304844-4304845	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577713864	chr10:4304881-4304882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538706603	chr10:4304887-4304888	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553722015	chr10:4304890-4304891	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs572288713	chr10:4304952-4304953	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs139446856	chr10:4304954-4304955	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs144138172	chr10:4304961-4304962	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs114686340	chr10:4304997-4304998	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs576365232	chr10:4305012-4305013	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs201653714	chr10:4305029-4305030	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs67998542	chr10:4305030-4305031	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs543494254	chr10:4305037-4305038	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs10700201	chr10:4305046-4305047	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs58642183	chr10:4305056-4305057	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs565260797	chr10:4305069-4305070	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs192337368	chr10:4305092-4305093	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs574175722	chr10:4305131-4305132	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs146317063	chr10:4305139-4305140	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs530233272	chr10:4305171-4305172	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs11252425	chr10:4305181-4305182	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs60473449	chr10:4305210-4305211	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs150984289	chr10:4305226-4305227	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs570053050	chr10:4305276-4305277	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs537343833	chr10:4305294-4305295	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs139510093	chr10:4305303-4305304	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs142755606	chr10:4305317-4305318	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs10904214	chr10:4305322-4305323	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs151064567	chr10:4305326-4305327	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs576717375	chr10:4305353-4305354	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs572124768	chr10:4305448-4305449	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs536460034	chr10:4305452-4305453	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs140974161	chr10:4305497-4305498	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs10904215	chr10:4305509-4305510	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs77196142	chr10:4305520-4305521	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs527304274	chr10:4305533-4305534	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs10904216	chr10:4305557-4305558	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs541019660	chr10:4305569-4305570	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs116087873	chr10:4305589-4305590	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs149828766	chr10:4305604-4305605	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs184668910	chr10:4305648-4305649	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs563521880	chr10:4305660-4305661	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs367816154	chr10:4305688-4305689	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs113554813	chr10:4305705-4305706	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs10795149	chr10:4305729-4305730	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs529737249	chr10:4305805-4305806	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs10904217	chr10:4305823-4305824	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21611746	CNVD

Chromatin state (count:294 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4296800-4308800	Weak transcription	Psoas Muscle	Psoas
2	chr10:4298200-4305800	Weak transcription	Aorta	Aorta
3	chr10:4300600-4306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:4301600-4305800	Weak transcription	Spleen	Spleen
5	chr10:4301600-4316000	Weak transcription	Gastric	stomach
6	chr10:4302200-4306800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:4302400-4305800	Weak transcription	Lung	lung
8	chr10:4302600-4305600	Weak transcription	Ovary	ovary
9	chr10:4302800-4305800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4302800-4305800	Weak transcription	Right Ventricle	heart
11	chr10:4303000-4305400	Weak transcription	A549	lung
12	chr10:4303000-4305800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:4303200-4305200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:4303200-4305400	Weak transcription	NHLF	lung
15	chr10:4303200-4305600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:4303200-4305600	Weak transcription	Small Intestine	intestine
17	chr10:4303200-4305800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:4303200-4305800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:4303200-4305800	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:4303200-4305800	Weak transcription	Fetal Stomach	stomach
21	chr10:4303200-4305800	Weak transcription	Left Ventricle	heart
22	chr10:4303200-4305800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:4303200-4308800	Weak transcription	Fetal Brain Male	brain
24	chr10:4303200-4308800	Weak transcription	HMEC	breast
25	chr10:4303200-4309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:4303200-4312200	Weak transcription	HUVEC	blood vessel
27	chr10:4303400-4308000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:4303400-4308800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:4303400-4308800	Weak transcription	Fetal Heart	heart
30	chr10:4303400-4312200	Weak transcription	NHEK	skin
31	chr10:4303800-4305800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:4304000-4309000	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:4304600-4306200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:4304800-4305000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:4304800-4305000	Enhancers	Right Atrium	heart
36	chr10:4304800-4305000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:4304800-4305600	Enhancers	Hela-S3	cervix
38	chr10:4304800-4306200	Enhancers	NHDF-Ad	bronchial
39	chr10:4305000-4305400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:4305000-4305800	Weak transcription	Right Atrium	heart
41	chr10:4305000-4309000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:4305200-4305800	Weak transcription	Pancreas	Pancrea
43	chr10:4305200-4306400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:4305200-4306800	Enhancers	Liver	Liver
45	chr10:4305400-4306000	Enhancers	A549	lung
46	chr10:4305400-4306400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:4305400-4306400	Enhancers	Fetal Lung	lung
48	chr10:4305400-4306400	Enhancers	NHLF	lung
49	chr10:4305600-4306200	Enhancers	Small Intestine	intestine
50	chr10:4305600-4306200	Flanking Active TSS	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links