Variant report

Variant	rs10904217
Chromosome Location	chr10:4305823-4305824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3825342..3830573-chr10:4304925..4310190,7	MCF-7	breast:
2	chr10:4301639..4303870-chr10:4304089..4305971,2	MCF-7	breast:
3	chr10:4304386..4306768-chr10:4318241..4320361,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10795147	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795148	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904213	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904214	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904215	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904216	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904221	0.80[EUR][1000 genomes]
rs11252418	0.92[EUR][1000 genomes]
rs1923394	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065090	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3934212	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4880673	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1050694	chr10:4290802-4306798	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4296800-4308800	Weak transcription	Psoas Muscle	Psoas
2	chr10:4300600-4306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:4301600-4316000	Weak transcription	Gastric	stomach
4	chr10:4302200-4306800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:4303200-4308800	Weak transcription	Fetal Brain Male	brain
6	chr10:4303200-4308800	Weak transcription	HMEC	breast
7	chr10:4303200-4309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:4303200-4312200	Weak transcription	HUVEC	blood vessel
9	chr10:4303400-4308000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:4303400-4308800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:4303400-4308800	Weak transcription	Fetal Heart	heart
12	chr10:4303400-4312200	Weak transcription	NHEK	skin
13	chr10:4304000-4309000	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:4304600-4306200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:4304800-4306200	Enhancers	NHDF-Ad	bronchial
16	chr10:4305000-4309000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:4305200-4306400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:4305200-4306800	Enhancers	Liver	Liver
19	chr10:4305400-4306000	Enhancers	A549	lung
20	chr10:4305400-4306400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:4305400-4306400	Enhancers	Fetal Lung	lung
22	chr10:4305400-4306400	Enhancers	NHLF	lung
23	chr10:4305600-4306200	Enhancers	Small Intestine	intestine
24	chr10:4305600-4306200	Flanking Active TSS	Hela-S3	cervix
25	chr10:4305600-4306800	Enhancers	Adipose Nuclei	Adipose
26	chr10:4305600-4306800	Enhancers	Ovary	ovary
27	chr10:4305600-4306800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:4305600-4309800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:4305800-4306200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:4305800-4306200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:4305800-4306200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:4305800-4306200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:4305800-4306200	Enhancers	Aorta	Aorta
34	chr10:4305800-4306200	Enhancers	Rectal Smooth Muscle	rectum
35	chr10:4305800-4306200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:4305800-4306400	Enhancers	Fetal Intestine Large	intestine
37	chr10:4305800-4306400	Enhancers	Fetal Muscle Leg	muscle
38	chr10:4305800-4306400	Enhancers	Fetal Stomach	stomach
39	chr10:4305800-4306400	Enhancers	Stomach Smooth Muscle	stomach
40	chr10:4305800-4306600	Enhancers	Colonic Mucosa	Colon
41	chr10:4305800-4306800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:4305800-4306800	Enhancers	Lung	lung
43	chr10:4305800-4306800	Enhancers	Right Atrium	heart
44	chr10:4305800-4307000	Enhancers	Fetal Muscle Trunk	muscle
45	chr10:4305800-4307000	Enhancers	Right Ventricle	heart
46	chr10:4305800-4307200	Enhancers	Left Ventricle	heart
47	chr10:4305800-4307200	Enhancers	Spleen	Spleen
48	chr10:4305800-4307400	Enhancers	Placenta	Placenta

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