Variant report

Variant	rs10904221
Chromosome Location	chr10:4327186-4327187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4326364..4328633-chr10:4329094..4331140,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10795147	0.80[EUR][1000 genomes]
rs10795148	0.80[EUR][1000 genomes]
rs10904214	0.80[EUR][1000 genomes]
rs10904215	0.80[EUR][1000 genomes]
rs10904216	0.80[EUR][1000 genomes]
rs10904217	0.80[EUR][1000 genomes]
rs10904218	0.80[EUR][1000 genomes]
rs10904219	0.80[EUR][1000 genomes]
rs1923394	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4880673	0.80[EUR][1000 genomes]
rs7086966	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
2	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4321600-4327800	Enhancers	NHLF	lung
7	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
8	chr10:4323400-4331000	Weak transcription	Lung	lung
9	chr10:4324200-4327200	Enhancers	Adipose Nuclei	Adipose
10	chr10:4324800-4327800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:4325000-4329800	Weak transcription	Left Ventricle	heart
12	chr10:4326000-4327600	Enhancers	Ovary	ovary
13	chr10:4326000-4327600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:4326200-4327400	Enhancers	Right Ventricle	heart
15	chr10:4326200-4327600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:4326200-4327800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:4326200-4328200	Enhancers	Dnd41	blood
18	chr10:4326400-4329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:4326600-4327200	Enhancers	Osteobl	bone
20	chr10:4326600-4328800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:4326600-4330000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:4326800-4327200	Enhancers	Small Intestine	intestine
23	chr10:4326800-4327400	Enhancers	Aorta	Aorta
24	chr10:4326800-4327600	Enhancers	Fetal Thymus	thymus
25	chr10:4327000-4327200	Weak transcription	Esophagus	oesophagus
26	chr10:4327000-4327400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:4327000-4327600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:4327000-4327600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:4327000-4327800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:4327000-4327800	Enhancers	NHDF-Ad	bronchial
31	chr10:4327000-4329400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:4327000-4331000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:4327000-4334600	Weak transcription	Right Atrium	heart

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