Variant report

Variant	nsv437798
Chromosome Location	chr15:34175336-34177716
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34173988..34176923-chr15:34179211..34180812,2	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:114 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7177269	chr15:34175336-34175337	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs546523544	chr15:34175383-34175384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs185410344	chr15:34175409-34175410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs147717907	chr15:34175415-34175416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114872053	chr15:34175432-34175433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs965692	chr15:34175443-34175444	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs529765038	chr15:34175452-34175453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs142474572	chr15:34175472-34175473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189508787	chr15:34175480-34175481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529537148	chr15:34175487-34175488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs140862028	chr15:34175542-34175543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs10608133	chr15:34175545-34175546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569157983	chr15:34175552-34175553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113015325	chr15:34175576-34175577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375015162	chr15:34175610-34175611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547787873	chr15:34175637-34175638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552093831	chr15:34175662-34175663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570396047	chr15:34175699-34175700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533020063	chr15:34175732-34175733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555962866	chr15:34175743-34175744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs574542631	chr15:34175745-34175746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368504358	chr15:34175746-34175747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs71723512	chr15:34175772-34175773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535586749	chr15:34175775-34175776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192994683	chr15:34175790-34175791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs144676520	chr15:34175822-34175823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145709914	chr15:34175836-34175837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546212978	chr15:34175852-34175853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564805847	chr15:34175862-34175863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576790040	chr15:34175869-34175870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs544092738	chr15:34175878-34175879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs7177889	chr15:34175879-34175880	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs368035626	chr15:34175899-34175900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs377026586	chr15:34175900-34175901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551555410	chr15:34175927-34175928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529438964	chr15:34175940-34175941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555358552	chr15:34175942-34175943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs148921351	chr15:34175968-34175969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7176081	chr15:34175972-34175973	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs373665808	chr15:34176018-34176019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs34542773	chr15:34176030-34176031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143192788	chr15:34176086-34176087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551733147	chr15:34176104-34176105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs16958202	chr15:34176116-34176117	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs578192277	chr15:34176162-34176163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115954219	chr15:34176170-34176171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs148281737	chr15:34176197-34176198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184342637	chr15:34176246-34176247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78325218	chr15:34176278-34176279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs79350680	chr15:34176279-34176280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34164400-34186400	Weak transcription	Right Atrium	heart
3	chr15:34168200-34176000	Weak transcription	Primary T cells from cord blood	blood
4	chr15:34177200-34177400	Enhancers	Aorta	Aorta

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