Variant report

Variant	rs7177269
Chromosome Location	chr15:34175336-34175337
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34173988..34176923-chr15:34179211..34180812,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10163048	1.00[MEX][hapmap]
rs10438378	0.85[CEU][hapmap]
rs10519889	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519898	1.00[MEX][hapmap]
rs11629862	0.85[EUR][1000 genomes]
rs11853646	0.85[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11855356	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs16957945	1.00[MEX][hapmap]
rs16957951	1.00[MEX][hapmap]
rs16958202	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958222	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16958228	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16958235	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16958242	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16958247	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs16958281	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs16958299	0.85[CEU][hapmap]
rs2551416	1.00[JPT][hapmap]
rs2551417	1.00[JPT][hapmap]
rs3794590	1.00[JPT][hapmap]
rs41279232	0.92[EUR][1000 genomes]
rs4265777	1.00[JPT][hapmap]
rs477192	1.00[JPT][hapmap]
rs484256	1.00[JPT][hapmap]
rs489349	1.00[JPT][hapmap]
rs520935	1.00[JPT][hapmap]
rs55688824	0.92[EUR][1000 genomes]
rs55726623	0.92[EUR][1000 genomes]
rs557460	1.00[JPT][hapmap]
rs55786211	0.92[EUR][1000 genomes]
rs55803898	0.92[EUR][1000 genomes]
rs55846435	0.92[EUR][1000 genomes]
rs55980511	0.92[EUR][1000 genomes]
rs56090340	0.92[EUR][1000 genomes]
rs56258848	0.92[EUR][1000 genomes]
rs56385459	0.92[EUR][1000 genomes]
rs57308544	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs591036	1.00[JPT][hapmap]
rs591423	1.00[JPT][hapmap]
rs592839	1.00[JPT][hapmap]
rs592907	1.00[JPT][hapmap]
rs60933918	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs609635	1.00[JPT][hapmap]
rs61027076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs618574	1.00[JPT][hapmap]
rs636322	1.00[JPT][hapmap]
rs647721	1.00[CHD][hapmap]
rs6495271	0.85[CEU][hapmap]
rs6495303	0.80[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap]
rs6495305	0.97[EUR][1000 genomes]
rs6495319	1.00[JPT][hapmap]
rs671822	1.00[JPT][hapmap]
rs684146	1.00[JPT][hapmap]
rs685516	1.00[JPT][hapmap]
rs7163545	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7165072	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170693	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176081	0.85[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7177889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180788	1.00[JPT][hapmap]
rs73372076	0.92[EUR][1000 genomes]
rs73375714	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73375717	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7403622	1.00[JPT][hapmap]
rs7495348	1.00[JPT][hapmap]
rs7495955	1.00[JPT][hapmap]
rs7496144	1.00[JPT][hapmap]
rs8026540	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs8033236	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9302282	0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs9302283	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv437798	chr15:34175336-34177716	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34164400-34186400	Weak transcription	Right Atrium	heart
3	chr15:34168200-34176000	Weak transcription	Primary T cells from cord blood	blood

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