Variant report

Variant	rs3794590
Chromosome Location	chr15:34164484-34164485
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10519884	1.00[CHB][hapmap]
rs16958247	1.00[JPT][hapmap]
rs16958306	1.00[CHB][hapmap]
rs17236651	1.00[CHB][hapmap]
rs2241648	1.00[CEU][hapmap]
rs2551416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2551417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2879427	1.00[CHB][hapmap]
rs3794591	0.92[ASN][1000 genomes]
rs4265777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs477192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs484256	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs489349	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs516452	0.91[EUR][1000 genomes]
rs520935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs557460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs591036	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs591423	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs592839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs592907	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs609635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs618574	1.00[JPT][hapmap]
rs636322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6495319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs671822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs681666	1.00[CHB][hapmap]
rs684146	1.00[JPT][hapmap]
rs685516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7163545	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7177269	1.00[JPT][hapmap]
rs7180788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs724443	1.00[CHB][hapmap]
rs7403622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7495348	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7495955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7496144	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8033236	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs965692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
2	chr15:34143000-34165000	Weak transcription	Psoas Muscle	Psoas
3	chr15:34149400-34165800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:34150800-34167400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:34152400-34167600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:34153400-34166400	Weak transcription	HMEC	breast
7	chr15:34153600-34165000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:34153600-34166000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:34153600-34166000	Weak transcription	NHEK	skin
10	chr15:34153800-34164600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:34155600-34169600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:34158600-34168800	Weak transcription	Gastric	stomach
13	chr15:34158600-34172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:34158800-34167200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:34158800-34168000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:34158800-34169200	Weak transcription	Fetal Intestine Large	intestine
17	chr15:34159000-34165000	Weak transcription	A549	lung
18	chr15:34159000-34165000	Weak transcription	HSMM	muscle
19	chr15:34159000-34166200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:34159000-34172600	Weak transcription	Aorta	Aorta
21	chr15:34159600-34164800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:34159600-34168400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:34159600-34168600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:34159600-34169600	Weak transcription	Liver	Liver
25	chr15:34159800-34166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:34159800-34166600	Weak transcription	Adipose Nuclei	Adipose
27	chr15:34159800-34168200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:34159800-34169400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:34160000-34168800	Weak transcription	Ovary	ovary
30	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
31	chr15:34160200-34164600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:34160400-34164600	Weak transcription	Placenta	Placenta
33	chr15:34160400-34167400	Weak transcription	Primary T cells from cord blood	blood
34	chr15:34160400-34168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:34163800-34165200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:34164000-34164600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:34164000-34164800	Enhancers	Brain Anterior Caudate	brain
38	chr15:34164000-34165000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr15:34164000-34165000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr15:34164000-34165200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:34164000-34165200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:34164000-34165400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:34164200-34164600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:34164200-34164600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:34164200-34164600	Enhancers	Brain Angular Gyrus	brain
46	chr15:34164200-34164600	Enhancers	Fetal Stomach	stomach
47	chr15:34164200-34164600	Enhancers	HSMMtube	muscle
48	chr15:34164200-34164800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:34164200-34164800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:34164200-34164800	Enhancers	Brain Hippocampus Middle	brain

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