Variant report

Variant	rs8026540
Chromosome Location	chr15:34177547-34177548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10163048	1.00[MEX][hapmap]
rs10519889	0.89[ASW][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10519898	1.00[MEX][hapmap]
rs11854992	1.00[CEU][hapmap]
rs1529542	1.00[CEU][hapmap]
rs16957945	1.00[MEX][hapmap]
rs16957951	1.00[MEX][hapmap]
rs16958077	1.00[CEU][hapmap]
rs16958121	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16958170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958178	1.00[EUR][1000 genomes]
rs16958202	1.00[YRI][hapmap]
rs16958222	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16958228	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16958235	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16958242	0.82[AFR][1000 genomes]
rs16958247	0.88[YRI][hapmap]
rs16958278	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958306	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2052610	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052614	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4780186	1.00[CEU][hapmap]
rs57308544	0.90[AFR][1000 genomes]
rs58374300	1.00[EUR][1000 genomes]
rs60091659	1.00[EUR][1000 genomes]
rs60933918	0.90[AFR][1000 genomes]
rs61172583	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61247330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495303	0.89[ASW][hapmap];1.00[CEU][hapmap];0.80[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495332	1.00[CEU][hapmap]
rs6495403	1.00[CEU][hapmap]
rs7163545	0.91[LWK][hapmap];1.00[YRI][hapmap]
rs7165072	0.90[AFR][1000 genomes]
rs7165981	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168937	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7170693	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7170929	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7171854	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7172238	1.00[CEU][hapmap]
rs7172406	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7176081	0.93[GIH][hapmap]
rs7177269	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7177583	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7178927	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7181961	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183165	1.00[CEU][hapmap]
rs73372074	1.00[EUR][1000 genomes]
rs73372097	1.00[EUR][1000 genomes]
rs73373905	1.00[EUR][1000 genomes]
rs73375714	0.89[AFR][1000 genomes]
rs8024867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026717	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034673	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037644	1.00[EUR][1000 genomes]
rs8038636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041406	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv437798	chr15:34175336-34177716	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv568922	chr15:34175972-34194586	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34164400-34186400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links