Variant report

Variant	rs73373905
Chromosome Location	chr15:34150896-34150897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16958121	1.00[EUR][1000 genomes]
rs16958170	1.00[EUR][1000 genomes]
rs16958178	1.00[EUR][1000 genomes]
rs16958278	1.00[EUR][1000 genomes]
rs16958306	1.00[EUR][1000 genomes]
rs2052610	1.00[EUR][1000 genomes]
rs2052613	1.00[EUR][1000 genomes]
rs2052614	1.00[EUR][1000 genomes]
rs58374300	1.00[EUR][1000 genomes]
rs60091659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61172583	1.00[EUR][1000 genomes]
rs61247330	1.00[EUR][1000 genomes]
rs6495303	1.00[EUR][1000 genomes]
rs7165981	1.00[EUR][1000 genomes]
rs7168937	1.00[EUR][1000 genomes]
rs7170929	1.00[EUR][1000 genomes]
rs7171854	1.00[EUR][1000 genomes]
rs7172406	1.00[EUR][1000 genomes]
rs7177583	1.00[EUR][1000 genomes]
rs7178927	1.00[EUR][1000 genomes]
rs7181961	1.00[EUR][1000 genomes]
rs73372074	1.00[EUR][1000 genomes]
rs73372097	1.00[EUR][1000 genomes]
rs8024867	1.00[EUR][1000 genomes]
rs8026540	1.00[EUR][1000 genomes]
rs8026717	1.00[EUR][1000 genomes]
rs8034673	1.00[EUR][1000 genomes]
rs8037644	1.00[EUR][1000 genomes]
rs8038636	1.00[EUR][1000 genomes]
rs8041144	1.00[EUR][1000 genomes]
rs8041406	1.00[EUR][1000 genomes]
rs8041930	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:34091800-34151000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:34124400-34151200	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:34129800-34151600	Weak transcription	Fetal Brain Female	brain
6	chr15:34130000-34151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:34130800-34151200	Weak transcription	Aorta	Aorta
8	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
9	chr15:34137400-34164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:34138600-34151600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:34139800-34156400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:34139800-34164200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
14	chr15:34143000-34165000	Weak transcription	Psoas Muscle	Psoas
15	chr15:34143400-34160400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:34143600-34164200	Weak transcription	Brain Angular Gyrus	brain
17	chr15:34143800-34156200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:34144400-34151000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:34144600-34151600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:34145000-34152200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:34145000-34152200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:34145000-34158200	Weak transcription	Gastric	stomach
23	chr15:34145000-34161200	Weak transcription	Small Intestine	intestine
24	chr15:34145200-34151000	Weak transcription	Placenta	Placenta
25	chr15:34145200-34152200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:34145200-34152200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:34145200-34152200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:34145200-34152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:34145200-34152200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:34145200-34152200	Weak transcription	HMEC	breast
31	chr15:34145400-34152200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:34145400-34152200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:34145400-34152800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:34145400-34156600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:34145600-34151200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:34145600-34154200	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:34145600-34158200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:34145600-34158600	Weak transcription	HSMM	muscle
39	chr15:34145800-34152800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:34145800-34152800	Weak transcription	Osteobl	bone
41	chr15:34145800-34153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:34145800-34158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:34146200-34153800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr15:34146400-34153200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr15:34146400-34158200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:34146600-34153600	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:34146800-34151200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:34146800-34151600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr15:34146800-34152600	Strong transcription	Brain Anterior Caudate	brain
50	chr15:34146800-34152800	Weak transcription	Hela-S3	cervix

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