Variant report

Variant	rs58374300
Chromosome Location	chr15:34137525-34137526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34131010..34134235-chr15:34134372..34138936,4	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16958121	1.00[EUR][1000 genomes]
rs16958170	1.00[EUR][1000 genomes]
rs16958178	1.00[EUR][1000 genomes]
rs16958278	1.00[EUR][1000 genomes]
rs16958306	1.00[EUR][1000 genomes]
rs2052610	1.00[EUR][1000 genomes]
rs2052613	1.00[EUR][1000 genomes]
rs2052614	1.00[EUR][1000 genomes]
rs60091659	1.00[EUR][1000 genomes]
rs61172583	1.00[EUR][1000 genomes]
rs61247330	1.00[EUR][1000 genomes]
rs6495303	1.00[EUR][1000 genomes]
rs7165981	1.00[EUR][1000 genomes]
rs7168937	1.00[EUR][1000 genomes]
rs7170929	1.00[EUR][1000 genomes]
rs7171854	1.00[EUR][1000 genomes]
rs7172238	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7172406	1.00[EUR][1000 genomes]
rs7177583	1.00[EUR][1000 genomes]
rs7178927	1.00[EUR][1000 genomes]
rs7181961	1.00[EUR][1000 genomes]
rs73372074	1.00[EUR][1000 genomes]
rs73372097	1.00[EUR][1000 genomes]
rs73373905	1.00[EUR][1000 genomes]
rs8024867	1.00[EUR][1000 genomes]
rs8026540	1.00[EUR][1000 genomes]
rs8026717	1.00[EUR][1000 genomes]
rs8034673	1.00[EUR][1000 genomes]
rs8037644	1.00[EUR][1000 genomes]
rs8038636	1.00[EUR][1000 genomes]
rs8041144	1.00[EUR][1000 genomes]
rs8041406	1.00[EUR][1000 genomes]
rs8041930	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:34091800-34151000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:34114400-34149400	Weak transcription	Fetal Stomach	stomach
4	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:34124400-34146800	Weak transcription	Brain Substantia Nigra	brain
6	chr15:34124400-34148600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:34124400-34151200	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:34127800-34147800	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:34128200-34144200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:34129800-34151600	Weak transcription	Fetal Brain Female	brain
11	chr15:34130000-34151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:34130800-34151200	Weak transcription	Aorta	Aorta
13	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
14	chr15:34131200-34146800	Weak transcription	Brain Anterior Caudate	brain
15	chr15:34132200-34146400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:34133000-34138200	Weak transcription	HSMMtube	muscle
17	chr15:34134200-34138800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr15:34134600-34141400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:34135000-34141400	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:34135200-34138200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:34135600-34137600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:34136400-34138200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:34136600-34139200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:34137000-34139000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:34137200-34137600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:34137200-34138400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:34137200-34140200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr15:34137400-34138000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:34137400-34143400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:34137400-34144400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:34137400-34164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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